User: Charles Plessy

gravatar for Charles Plessy
Charles Plessy1.8k
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Japan
Website:
http://population-tran...
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6 hours ago
Joined:
2 years, 9 months ago
Email:
c***************@plessy.org

Posts by Charles Plessy

<prev • 203 results • page 1 of 21 • next >
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Comment: C: why does this pipe work
... http://stackoverflow.com/questions/43948424/piping-to-a-process-when-the-process-doesnt-exist ...
written 13 days ago by Charles Plessy1.8k
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Comment: C: Setting up a lab wiki
... Like others, we are now using GitLab, but before this we were using [Trac](https://trac.edgewall.org/)'s wiki, as it is easy to install and run, and easy to backup. While I strongly recommend to learn to use source code management systems, if your colleagues are just not yet there and you just need ...
written 14 days ago by Charles Plessy1.8k
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Comment: C: A bioinformatics-friendly mastodon server ?
... I just created a "professional" [account](https://mastodon.technology/@charles_plessy) on . ...
written 14 days ago by Charles Plessy1.8k
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Comment: C: why does this pipe work
... Thank ! Here is also an interesting link to [an answer in StackOverflow]( http://stackoverflow.com/questions/43948424/piping-to-a-process-when-the-process-doesnt-exist), posted by [Alex Reynolds](https://www.biostars.org/u/20/) in an answer that mysteriously disapeared from this discussion. ...
written 15 days ago by Charles Plessy1.8k
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Comment: C: why does this pipe work
... > samtools view file.bam | 1>/dev/null > Your first command tries to read the whole bam file without the header and pipe it (kind of sam file) via > stdout into a second command, in your case it is "1". Most likely you do not have program or script called > "1" in your system. S ...
written 15 days ago by Charles Plessy1.8k
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Answer: A: why does this pipe work
... Actually, your command *does not* work: if you would replace `/dev/null` by a file name, you would see that the resulting file is empty when the pipe symbol is present. This said, I do not understand why it is not a syntax error. ...
written 16 days ago by Charles Plessy1.8k
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Comment: C: PICARD MarkDuplicates with random barcodes
... > edit : I just found this paper discussing barcodes (or UMIs) The [Ph. D. thesis of Kasper Karlsson](https://openarchive.ki.se/xmlui/handle/10616/45053) is also a very good read about UMIs. ...
written 20 days ago by Charles Plessy1.8k
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Comment: C: Gene symbols from CAGE peak coordinates
... CAGE is designed to analyse expression levels of peaks of transcription start sites representing alternative promoters of genes. Thus, if you would reduce the data to gene level by summing all tags assigned to the same gene symbol, you would lose potentially valuable information. This said, I some ...
written 20 days ago by Charles Plessy1.8k
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Forum: A bioinformatics-friendly mastodon server ?
... Hi all, the [Mastodon](https://en.wikipedia.org/wiki/Mastodon_(software)) micro-blogging platform is taking off. Does somebody know an [instance](https://mnm.social/) where our favorite Biostar topics are frequent on the local timeline ? ...
social mastodon micro-blogging forum written 23 days ago by Charles Plessy1.8k
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Comment: C: How to uninstall bcftools 0.1.19 from ubuntu 14.04
... Indeed, there is [no bcftools package for Ubuntu versions lower than 16.04](http://packages.ubuntu.com/search?keywords=bcftools). If a `bcftools` command is available, then it probably comes from a patch such as `/usr/local/bin/` or `~/bin/` , unless a third-party binary package was installed. Joe, ...
written 23 days ago by Charles Plessy1.8k

Latest awards to Charles Plessy

Commentator 14 days ago, created a comment with at least 3 up-votes. For C: why does this pipe work
Good Answer 4 weeks ago, created an answer that was upvoted at least 5 times. For A: Develop an R package for CRAN vs BioConductor
Scholar 5 weeks ago, created an answer that has been accepted. For A: Bedtools trouble with double digit chromosomes
Scholar 5 weeks ago, created an answer that has been accepted. For A: Bedtools trouble with double digit chromosomes
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Appreciated 5 weeks ago, created a post with more than 5 votes. For Patch ERCC spike sequences to get their real 5-prime ends.
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Appreciated 7 weeks ago, created a post with more than 5 votes. For Patch ERCC spike sequences to get their real 5-prime ends.
Scholar 7 weeks ago, created an answer that has been accepted. For A: Bedtools trouble with double digit chromosomes
Appreciated 10 weeks ago, created a post with more than 5 votes. For Patch ERCC spike sequences to get their real 5-prime ends.
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Popular Question 12 weeks ago, created a question with more than 1,000 views. For Patch ERCC spike sequences to get their real 5-prime ends.
Appreciated 4 months ago, created a post with more than 5 votes. For Patch ERCC spike sequences to get their real 5-prime ends.
Good Answer 4 months ago, created an answer that was upvoted at least 5 times. For A: Develop an R package for CRAN vs BioConductor
Appreciated 4 months ago, created a post with more than 5 votes. For Patch ERCC spike sequences to get their real 5-prime ends.
Scholar 4 months ago, created an answer that has been accepted. For A: Bedtools trouble with double digit chromosomes
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Guru 4 months ago, received more than 100 upvotes.
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Appreciated 4 months ago, created a post with more than 5 votes. For Patch ERCC spike sequences to get their real 5-prime ends.
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Scholar 5 months ago, created an answer that has been accepted. For A: Bedtools trouble with double digit chromosomes
Scholar 5 months ago, created an answer that has been accepted. For A: Map human cell line RNA-seq data to virus
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Centurion 6 months ago, created 100 posts.

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