User: Charles Plessy

gravatar for Charles Plessy
Charles Plessy2.4k
Reputation:
2,420
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Location:
Japan
Website:
http://population-tran...
Last seen:
1 day, 20 hours ago
Joined:
3 years, 8 months ago
Email:
c***************@plessy.org

Molecular biologist, open scientist and Debian developer.

Posts by Charles Plessy

<prev • 276 results • page 1 of 28 • next >
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Answer: A: Building bioinformatics tools in Ubuntu 17.10
... Ubuntu Bionic already comes with a [bowtie 2.3.4.1 package](https://packages.ubuntu.com/search?suite=bionic&keywords=bowtie2). It was compiled with GCC7 as you can see from the [build logs](https://launchpadlibrarian.net/356214175/buildlog_ubuntu-bionic-amd64.bowtie2_2.3.4.1-1_BUILDING.txt.gz). ...
written 16 days ago by Charles Plessy2.4k
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Comment: C: How to merge quality trimmed interlaced reads?
... Have you looked at the software listed in the post "[Tools to merge overlapping paired-end reads](https://www.biostars.org/p/225683/)"? ...
written 24 days ago by Charles Plessy2.4k
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Comment: C: Login with identity providers: can we have an alternative to Google?
... Hello Charles Plessy! We believe that this post does not fit the main topic of this site. No need since there is biostar.slack.com. For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell ...
written 25 days ago by Charles Plessy2.4k
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Comment: C: Login with identity providers: can we have an alternative to Google?
... Cool; I missed it; thank you. Closing this post accordingly. ...
written 25 days ago by Charles Plessy2.4k
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(Closed) Login with identity providers: can we have an alternative to Google?
... It was convenient to use GitHub as an identity provider. Will it have a chance to come back? Alternatively, how about GitLab or ORCID? ...
meta written 26 days ago by Charles Plessy2.4k
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Comment: C: suggestions to compare gene counts
... You have only one file, but with it, you generated multiple expression tables. Have you tried to compare the expression tables using software for differential gene expression ? ...
written 10 weeks ago by Charles Plessy2.4k
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Answer: A: suggestions to compare gene counts
... The field of [differential expression analysis](https://en.wikipedia.org/wiki/Gene_expression_profiling) is quite mature now, so I recommend to first look at existing solutions, that are based on one or two decades of experience. In case you do not know where to start and you are fine using [R](htt ...
written 10 weeks ago by Charles Plessy2.4k
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Answer: A: install genewise (wise2.4.1) on linux
... The `INSTALL` files states (edited for brevity): In the existing tar ball go: - make all in src directory - cd into dyc go make dyc - on linux this will fail. Then go make linux Now go: - copy dyc somewhere on your path; setenv WISECONFIGDIR to $wise-cvs-home/wi ...
written 11 weeks ago by Charles Plessy2.4k
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Answer: A: HOw to merge multifasta sequence into a single sequence having only one header?
... Using the [union](http://emboss.sourceforge.net/apps/cvs/emboss/apps/union.html) command from the [EMBOSS](http://emboss.sourceforge.net/) package: $ cat test.fasta >seq1 AAAATTGGG >seq2 GGCCCTTTT >seq3 AAATGGGG $ union -filter test.fasta >seq1 ...
written 12 weeks ago by Charles Plessy2.4k
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Comment: C: How can I install xml development headers (version 2.9.1) and xz development he
... > xz development headers (version 5.1.1 tested) In doubt, you can also query the APT cache for package descriptions. $ apt search xz development files Sorting... Done Full Text Search... Done devscripts/stable,now 2.17.6+deb9u1 amd64 [installed] scripts to make the life of ...
written 3 months ago by Charles Plessy2.4k

Latest awards to Charles Plessy

Teacher 5 days ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Popular Question 12 weeks ago, created a question with more than 1,000 views. For Patch ERCC spike sequences to get their real 5-prime ends.
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Scholar 5 months ago, created an answer that has been accepted. For A: Bedtools trouble with double digit chromosomes
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Popular Question 9 months ago, created a question with more than 1,000 views. For Patch ERCC spike sequences to get their real 5-prime ends.
Scholar 9 months ago, created an answer that has been accepted. For A: Bedtools trouble with double digit chromosomes
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Good Answer 10 months ago, created an answer that was upvoted at least 5 times. For A: Develop an R package for CRAN vs BioConductor
Appreciated 10 months ago, created a post with more than 5 votes. For Patch ERCC spike sequences to get their real 5-prime ends.
Scholar 10 months ago, created an answer that has been accepted. For A: Bedtools trouble with double digit chromosomes
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Commentator 11 months ago, created a comment with at least 3 up-votes. For C: why does this pipe work
Good Answer 12 months ago, created an answer that was upvoted at least 5 times. For A: Develop an R package for CRAN vs BioConductor
Scholar 12 months ago, created an answer that has been accepted. For A: Bedtools trouble with double digit chromosomes
Scholar 12 months ago, created an answer that has been accepted. For A: Bedtools trouble with double digit chromosomes
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Appreciated 12 months ago, created a post with more than 5 votes. For Patch ERCC spike sequences to get their real 5-prime ends.
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Appreciated 12 months ago, created a post with more than 5 votes. For Patch ERCC spike sequences to get their real 5-prime ends.
Scholar 12 months ago, created an answer that has been accepted. For A: Bedtools trouble with double digit chromosomes
Appreciated 13 months ago, created a post with more than 5 votes. For Patch ERCC spike sequences to get their real 5-prime ends.

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