User: roy.granit

gravatar for roy.granit
roy.granit830
Reputation:
830
Status:
Trusted
Location:
Israel/LabWorm
Website:
http://roygranit.me/
Twitter:
rgranit
Scholar ID:
Google Scholar Page
Last seen:
3 weeks, 3 days ago
Joined:
5 years, 11 months ago
Email:
r*********@gmail.com

I'm a co-founder & CTO at LabWorm a crowd voting platform that enables scientists to discover the best & newest online research tools. Previously I explored pathways that determine intratumoral heterogeneity using high-throughput molecular biology & bioinformatics. My personal website.

Posts by roy.granit

<prev • 142 results • page 1 of 15 • next >
0
votes
0
answers
92
views
0
answers
Comment: C: Align to custom sequences using STAR aligner
... Thanks, how reliable is bbmap? never heard of it.. ...
written 9 weeks ago by roy.granit830
0
votes
0
answers
92
views
0
answers
Comment: C: Align to custom sequences using STAR aligner
... I did not mention that some of these genes do not exist in the genome.. ...
written 9 weeks ago by roy.granit830
2
votes
0
answers
92
views
0
answers
Align to custom sequences using STAR aligner
... I have 3 amplicons that I have sequenced and now I wish to align them to the sequences of these three genes so I can quantify how many reads mapped to each gene. In order to use STAR must I go through the steps of genome indexing or is there a way to align stright with the fasta file containing the ...
star rna-seq written 9 weeks ago by roy.granit830
2
votes
1
answer
116
views
1
answer
How to check how variable a given DNA sequence is?
... I have a human DNA sequence and I wish to check how variable this sequence is.. is there a way to check how many SNPs are found at the given location? Thanks! ...
snp dna written 11 weeks ago by roy.granit830 • updated 11 weeks ago by Pierre Lindenbaum129k
0
votes
0
answers
95
views
0
answers
Comment: C: Statistical significance of the intersection of three gene lists
... I wish to know if the overlap of ALL three lists together is significant, so I don't believe that contingency table would fit this use case. ...
written 3 months ago by roy.granit830
1
vote
0
answers
95
views
0
answers
Statistical significance of the intersection of three gene lists
... Hi All, I have 3 independent lists of genes, and I would like to assess the statistical significance of the intersection of the lists. For two groups I have used hypergeometric test, but I'm uncertain what should be done here. Any ideas? Thanks! ...
hypergeometric statistics written 3 months ago by roy.granit830
0
votes
0
answers
165
views
0
answers
Comment: C: ChIP to genes
... I found these tools: http://bioconductor.org/packages/devel/bioc/vignettes/ChIPseeker/inst/doc/ChIPseeker.html and http://great.stanford.edu/public/html/ ...
written 3 months ago by roy.granit830
2
votes
0
answers
165
views
0
answers
ChIP to genes
... Hi All, I have ChIP seq in the form of peaks per region: chr start end abs_summit pileup -log10(pvalue) fold_enrichment -log10(qvalue) chr1 856361 856664 856411 21 8.69656 4.06641 5.75518 chr1 859109 859948 859481 50 35.20025 9.42667 31.0408 chr1 877214 877610 877418 20 7.99405 3.8 ...
chip-seq written 3 months ago by roy.granit830
0
votes
0
answers
163
views
0
answers
Comment: C: Cutadapt terminated with exit signal: '24'.
... Thanks, it ran OK with just `cutadapt` ...
written 5 months ago by roy.granit830
0
votes
0
answers
163
views
0
answers
Comment: C: Cutadapt terminated with exit signal: '24'.
... Trim Galore uses Cutadapt in the process, but nothing shows in the log :( just this > This is cutadapt 1.18 with Python 3.6.6 Command line parameters: -j 1 > -e 0.1 -q 33 -O 1 -a CTGTCTCTTATA ./data/TCOC23_S14_R1_001.fastq.gz Processing reads on 1 core in single-end mode ... Will add the cod ...
written 5 months ago by roy.granit830

Latest awards to roy.granit

Popular Question 5 weeks ago, created a question with more than 1,000 views. For How to import a big matrix into matlab?
Popular Question 6 months ago, created a question with more than 1,000 views. For How to import a big matrix into matlab?
Popular Question 10 months ago, created a question with more than 1,000 views. For How to import a big matrix into matlab?
Scholar 10 months ago, created an answer that has been accepted. For A: Genes and respective pathways from FTP database
Great Question 17 months ago, created a question with more than 5,000 views. For What is the input for clusterProfiler R pack
Popular Question 17 months ago, created a question with more than 1,000 views. For How to import a big matrix into matlab?
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: About gene id
Popular Question 17 months ago, created a question with more than 1,000 views. For How to import a big matrix into matlab?
Popular Question 22 months ago, created a question with more than 1,000 views. For How to import a big matrix into matlab?
Centurion 2.0 years ago, created 100 posts.
Popular Question 2.1 years ago, created a question with more than 1,000 views. For How to import a big matrix into matlab?
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: About gene id
Supporter 2.5 years ago, voted at least 25 times.
Popular Question 2.8 years ago, created a question with more than 1,000 views. For How to import a big matrix into matlab?
Scholar 2.9 years ago, created an answer that has been accepted. For A: Genes and respective pathways from FTP database
Teacher 2.9 years ago, created an answer with at least 3 up-votes. For A: About gene id
Popular Question 3.7 years ago, created a question with more than 1,000 views. For How to import a big matrix into matlab?
Popular Question 4.4 years ago, created a question with more than 1,000 views. For How to import a big matrix into matlab?
Popular Question 4.4 years ago, created a question with more than 1,000 views. For How to import a big matrix into matlab?
Scholar 5.1 years ago, created an answer that has been accepted. For A: Genes and respective pathways from FTP database
Teacher 5.2 years ago, created an answer with at least 3 up-votes. For A: About gene id
Autobiographer 5.2 years ago, has more than 80 characters in the information field of the user's profile.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 718 users visited in the last hour