User: roy.granit

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roy.granit830
Reputation:
830
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Trusted
Location:
Israel/LabWorm
Website:
http://roygranit.me/
Twitter:
rgranit
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Google Scholar Page
Last seen:
1 day, 1 hour ago
Joined:
6 years, 4 months ago
Email:
r*********@gmail.com

I'm a co-founder & CTO at LabWorm a crowd voting platform that enables scientists to discover the best & newest online research tools. Previously I explored pathways that determine intratumoral heterogeneity using high-throughput molecular biology & bioinformatics. My personal website.

Posts by roy.granit

<prev • 148 results • page 1 of 15 • next >
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Comment: C: How do I plot several sns.clustermap heatmaps in a single figure?
... For now I've exported the plots to png files and loaded them into subplots: plt.figure(figsize=(30, 15)) plt.suptitle("title", fontsize=22) plt.subplot(133) plt.imshow(mpimg.imread('./figures/heatmap_2.png',format="png")) plt.title("expression") plt.grid ...
written 10 weeks ago by roy.granit830
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Comment: C: How do I plot several sns.clustermap heatmaps in a single figure?
... Thanks, I'm actually using a specific type of clustermap (https://scvelo.readthedocs.io/scvelo.pl.heatmap.html) and when I try to add 'ax' to it I get an error: `TypeError: heatmap() got multiple values for keyword argument 'ax'` ...
written 10 weeks ago by roy.granit830
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How do I plot several sns.clustermap heatmaps in a single figure?
... Hi All, Is there a way to plot several [clustermaps][1] in a single matplotlib figure. Edit: I'm specifically using [https://scvelo.readthedocs.io/scvelo.pl.heatmap.html][2] to generate the heatmap. This returns an object of type `seaborn.matrix.ClusterGrid` Thanks! [1]: https://seaborn.pyda ...
python seaborn written 10 weeks ago by roy.granit830
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Comment: C: Interpreting DEseq2 output
... Thanks, using `counts(dds, normalized=TRUE)` I was indeed able to obtain the normalized counts and obtain a better understanding of the data.. ...
written 5 months ago by roy.granit830
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Comment: C: Interpreting DEseq2 output
... The lib is 3' based, so I believe that the transcript length is not relevant in this case ...
written 5 months ago by roy.granit830
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Interpreting DEseq2 output
... I have been using DEseq2 for quite a while, but today I was looking a certain transcript and compared that to the raw counts, and found little login in the results. These are the output values: log2FoldChange: 0.3434941483 pvalue: 2.16740140052804e-06 padj: 5.65192536063831e-06 ...
deseq2 written 5 months ago by roy.granit830 • updated 5 months ago by rpolicastro3.3k
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Comment: C: Align to custom sequences using STAR aligner
... Thanks, how reliable is bbmap? never heard of it.. ...
written 7 months ago by roy.granit830
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Comment: C: Align to custom sequences using STAR aligner
... I did not mention that some of these genes do not exist in the genome.. ...
written 7 months ago by roy.granit830
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Align to custom sequences using STAR aligner
... I have 3 amplicons that I have sequenced and now I wish to align them to the sequences of these three genes so I can quantify how many reads mapped to each gene. In order to use STAR must I go through the steps of genome indexing or is there a way to align stright with the fasta file containing the ...
star rna-seq written 7 months ago by roy.granit830
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How to check how variable a given DNA sequence is?
... I have a human DNA sequence and I wish to check how variable this sequence is.. is there a way to check how many SNPs are found at the given location? Thanks! ...
snp dna written 8 months ago by roy.granit830 • updated 8 months ago by Pierre Lindenbaum133k

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