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Comment: Comment: DEseq2 with different designs matrix
14 days ago by QX ▴ 60
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424
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Comment: Comment: difference between macs2 callpeak using bam and bed file
29 days ago by QX ▴ 60
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424
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Comment: Comment: difference between macs2 callpeak using bam and bed file
29 days ago by QX ▴ 60
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347
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Comment: Comment: trimming 151bp to shorter k-mer in ATAC-seq analysis
4 weeks ago by QX ▴ 60
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3.1k
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Comment: Comment: ATAC-seq peak calling
4 weeks ago by QX ▴ 60
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406
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Comment: Comment: call peak for all replicates in all conditions using macs2
4 weeks ago by QX ▴ 60
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406
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Comment: Comment: call peak for all replicates in all conditions using macs2
4 weeks ago by QX ▴ 60
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347
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Comment: Comment: trimming 151bp to shorter k-mer in ATAC-seq analysis
4 weeks ago by QX ▴ 60
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2.0k
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Comment: Comment: How get density plot TSS region for genes of interest
4 weeks ago by QX ▴ 60
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9.1k
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Comment: Comment: Using featureCounts and DESeq2 to look at differences between ATAC-seq condition
4 weeks ago by QX ▴ 60
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2.0k
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Comment: Comment: How get density plot TSS region for genes of interest
4 weeks ago by QX ▴ 60
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526
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Comment: Comment: which bed file should be used for deeptools computeMatrix
5 weeks ago by QX ▴ 60
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526
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Comment: Comment: which bed file should be used for deeptools computeMatrix
5 weeks ago by QX ▴ 60
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2.0k
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Comment: Comment: Plotting chip signal at TSSs with deeptools
5 weeks ago by QX ▴ 60
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290
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Comment: Comment: MACS2 for multiple conditions in ATACseq analysis
7 weeks ago by QX ▴ 60
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290
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Comment: Comment: MACS2 for multiple conditions in ATACseq analysis
7 weeks ago by QX ▴ 60
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5.8k
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Comment: Comment: How to create SAF from text file for FeatureCounts
7 weeks ago by QX ▴ 60
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501
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Comment: Comment: featureCounts output
7 weeks ago by QX ▴ 60
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368
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Comment: Comment: is that statistical correct to use DEseq2 for proteomics data
7 weeks ago by QX ▴ 60
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511
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Comment: Comment: Increase the memory and core usage of R
7 weeks ago by QX ▴ 60
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501
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Comment: Comment: featureCounts output
7 weeks ago by QX ▴ 60
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501
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Comment: Comment: featureCounts output
8 weeks ago by QX ▴ 60
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501
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Comment: Comment: featureCounts output
8 weeks ago by QX ▴ 60
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1
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443
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Comment: Comment: input for gatk VariantAnnotator --dbsnp
8 weeks ago by QX ▴ 60
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443
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Comment: Comment: input for gatk VariantAnnotator --dbsnp
8 weeks ago by QX ▴ 60
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1
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443
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Comment: Comment: input for gatk VariantAnnotator --dbsnp
8 weeks ago by QX ▴ 60
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444
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Comment: Comment: best way to submit hpc job using snakemake
9 weeks ago by QX ▴ 60
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1
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444
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Comment: Comment: best way to submit hpc job using snakemake
10 weeks ago by QX ▴ 60
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1
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291
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Comment: Comment: snakemake config file with path
10 weeks ago by QX ▴ 60
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346
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Comment: Comment: Any recommended way to view scRNAseq results in an interactive format?
11 weeks ago by QX ▴ 60
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532
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Comment: Comment: Calling variants/SNP for single-cell RNA-seq data
11 weeks ago by QX ▴ 60
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384
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Comment: Comment: bash for merging bam files by samtools
3 months ago by QX ▴ 60
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429
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Comment: Comment: scRNA integration problem with cluster not being separated
3 months ago by QX ▴ 60
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503
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Comment: Comment: chIP-seq vs ATACseq analysis
3 months ago by QX ▴ 60
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1
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429
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Comment: Comment: scRNA integration problem with cluster not being separated
3 months ago by QX ▴ 60
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5.4k
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Comment: Comment: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
3 months ago by QX ▴ 60
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1
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5.4k
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Comment: Comment: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
3 months ago by QX ▴ 60
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0
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634
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
3 months ago by QX ▴ 60
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1
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634
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
3 months ago by QX ▴ 60
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634
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
3 months ago by QX ▴ 60
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2
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634
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
3 months ago by QX ▴ 60
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1
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7.0k
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Comment: Comment: Difference between proper paired reads and mapped and paired reads
3 months ago by QX ▴ 60
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374
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Comment: Comment: cannot conda install macs3 on linux
3 months ago by QX ▴ 60
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1
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633
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Comment: Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
3 months ago by QX ▴ 60
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633
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Comment: Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
3 months ago by QX ▴ 60
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0
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428
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Comment: Comment: Unexpected read length from NGS
3 months ago by QX ▴ 60
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0
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608
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Comment: Comment: Why gatk VariantAnnotator required bam and coverage files
4 months ago by QX ▴ 60
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1
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608
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Comment: Comment: Why gatk VariantAnnotator required bam and coverage files
4 months ago by QX ▴ 60
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374
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Comment: Comment: Cell communacations analysis. I only have the proteome of one type of cell
5 months ago by QX ▴ 60
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539
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Comment: Comment: Annotate genes from gtf file to vcf file
6 months ago by QX ▴ 60
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