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2
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2
replies
227
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statistical testing for MS/MS proteomics bulk samples
DEG proteomics
updated 5 weeks ago by 85k • written 5 weeks ago by ▴ 60
0
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0
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823
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Comment: Comment: Gatk haplotyper
5 weeks ago by QX ▴ 60
0
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1
reply
379
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Comment: Comment: coordinate vs contributions for the variables in PCA using FactoMineR
6 weeks ago by QX ▴ 60
0
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0
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379
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Comment: Comment: coordinate vs contributions for the variables in PCA using FactoMineR
6 weeks ago by QX ▴ 60
2
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4
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379
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coordinate vs contributions for the variables in PCA using FactoMineR
PCA
updated 6 weeks ago by 5.9k • written 6 weeks ago by ▴ 60
0
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0
replies
539
views
Comment: Comment: PCA for count data
7 weeks ago by QX ▴ 60
0
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0
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539
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Comment: Comment: PCA for count data
7 weeks ago by QX ▴ 60
0
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1
reply
539
views
Comment: Comment: PCA for count data
7 weeks ago by QX ▴ 60
3
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6
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539
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PCA for count data
PCA
7 weeks ago by QX ▴ 60
0
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0
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484
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Comment: Comment: DEseq2 with different designs matrix
3 months ago by QX ▴ 60
0
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3
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484
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DEseq2 with different designs matrix
DEseq2
3 months ago by QX ▴ 60
0
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0
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158
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Different position for same gene using annotatePeak from ChIPseeker
ChIPseeker ATACseq
3 months ago by QX ▴ 60
0
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0
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167
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plotHeatmap from deeptools explain
atac-seq
3 months ago by QX ▴ 60
0
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0
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647
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Comment: Comment: difference between macs2 callpeak using bam and bed file
3 months ago by QX ▴ 60
1
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1
reply
647
views
Comment: Comment: difference between macs2 callpeak using bam and bed file
3 months ago by QX ▴ 60
5
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4
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647
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difference between macs2 callpeak using bam and bed file
macs2 atac-seq
3 months ago by QX ▴ 60
0
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0
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416
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Comment: Comment: trimming 151bp to shorter k-mer in ATAC-seq analysis
3 months ago by QX ▴ 60
0
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0
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3.3k
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Comment: Comment: ATAC-seq peak calling
3 months ago by QX ▴ 60
0
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1
reply
500
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Comment: Comment: call peak for all replicates in all conditions using macs2
3 months ago by QX ▴ 60
0
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0
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500
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Comment: Comment: call peak for all replicates in all conditions using macs2
3 months ago by QX ▴ 60
0
votes
1
reply
416
views
Comment: Comment: trimming 151bp to shorter k-mer in ATAC-seq analysis
3 months ago by QX ▴ 60
2
votes
5
replies
500
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call peak for all replicates in all conditions using macs2
macs2 ATACseq
updated 3 months ago by ▴ 150 • written 3 months ago by ▴ 60
0
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0
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2.0k
views
Comment: Comment: How get density plot TSS region for genes of interest
3 months ago by QX ▴ 60
1
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4
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416
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trimming 151bp to shorter k-mer in ATAC-seq analysis
ATAC-seq
3 months ago by QX ▴ 60
0
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0
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9.6k
views
Comment: Comment: Using featureCounts and DESeq2 to look at differences between ATAC-seq condition
3 months ago by QX ▴ 60
0
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1
reply
2.0k
views
Comment: Comment: How get density plot TSS region for genes of interest
3 months ago by QX ▴ 60
0
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1
reply
702
views
Comment: Comment: which bed file should be used for deeptools computeMatrix
3 months ago by QX ▴ 60
0
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1
reply
702
views
Comment: Comment: which bed file should be used for deeptools computeMatrix
3 months ago by QX ▴ 60
3
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6
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702
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which bed file should be used for deeptools computeMatrix
atac-seq deeptools
updated 3 months ago by ★ 4.5k • written 3 months ago by ▴ 60
0
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0
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2.0k
views
Comment: Comment: Plotting chip signal at TSSs with deeptools
3 months ago by QX ▴ 60
0
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0
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192
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reference-point setting from computeMatrix
ATACseq
3 months ago by QX ▴ 60
0
votes
0
replies
157
views
which distance used for kmeans in deeptools plotHeatmap
atac deeptools
3 months ago by QX ▴ 60
1
vote
1
reply
279
views
merge replicate for bigWig files from macs2 peak calling
ATAC-seq
updated 4 months ago by 85k • written 4 months ago by ▴ 60
0
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0
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398
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Comment: Comment: MACS2 for multiple conditions in ATACseq analysis
4 months ago by QX ▴ 60
0
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1
reply
398
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Comment: Comment: MACS2 for multiple conditions in ATACseq analysis
4 months ago by QX ▴ 60
0
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0
replies
6.1k
views
Comment: Comment: How to create SAF from text file for FeatureCounts
4 months ago by QX ▴ 60
0
votes
1
reply
623
views
Comment: Comment: featureCounts output
4 months ago by QX ▴ 60
4
votes
4
replies
398
views
MACS2 for multiple conditions in ATACseq analysis
mac2
4 months ago by QX ▴ 60
4
votes
4
replies
597
views
Increase the memory and core usage of R
R
updated 4 months ago by ★ 28k • written 4 months ago by ▴ 60
0
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0
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441
views
Comment: Comment: is that statistical correct to use DEseq2 for proteomics data
4 months ago by QX ▴ 60
3
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2
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441
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is that statistical correct to use DEseq2 for proteomics data
proteomics DEseq2
updated 4 months ago by 85k • written 4 months ago by ▴ 60
0
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0
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597
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Comment: Comment: Increase the memory and core usage of R
4 months ago by QX ▴ 60
1
vote
0
replies
623
views
Comment: Comment: featureCounts output
4 months ago by QX ▴ 60
4
votes
8
replies
623
views
featureCounts output
macs2 featureCounts
updated 4 months ago by ★ 1.3k • written 4 months ago by ▴ 60
0
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0
replies
623
views
Comment: Comment: featureCounts output
4 months ago by QX ▴ 60
0
votes
0
replies
623
views
Comment: Comment: featureCounts output
4 months ago by QX ▴ 60
0
votes
1
reply
559
views
Comment: Comment: input for gatk VariantAnnotator --dbsnp
4 months ago by QX ▴ 60
0
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0
replies
559
views
Comment: Comment: input for gatk VariantAnnotator --dbsnp
4 months ago by QX ▴ 60
0
votes
1
reply
559
views
Comment: Comment: input for gatk VariantAnnotator --dbsnp
4 months ago by QX ▴ 60
2
votes
6
replies
559
views
input for gatk VariantAnnotator --dbsnp
VariantAnnotator gatk
updated 4 months ago by 148k • written 4 months ago by ▴ 60
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