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0
votes
0
replies
401
views
Comment:
Comment: Why gatk VariantAnnotator required bam and coverage files
14 days ago by
QX
• 0
0
votes
1
reply
401
views
Comment:
Comment: Why gatk VariantAnnotator required bam and coverage files
15 days ago by
QX
• 0
3
votes
4
replies
401
views
Why gatk VariantAnnotator required bam and coverage files
gatk
VariantAnnotator
14 days ago by
QX
• 0
0
votes
0
replies
132
views
Add geno header to VariantAnnotation objects
nichenet
scRNA-seq
24 days ago by
QX
• 0
0
votes
0
replies
263
views
Comment:
Comment: Cell communacations analysis. I only have the proteome of one type of cell
5 weeks ago by
QX
• 0
0
votes
0
replies
104
views
NicheNet cell-cell communication analysis outcome
nichenet
scRNA-seq
5 weeks ago by
QX
• 0
0
votes
0
replies
327
views
Comment:
Comment: Annotate genes from gtf file to vcf file
7 weeks ago by
QX
• 0
2
votes
3
replies
327
views
Annotate genes from gtf file to vcf file
gtf
genomics
vcf
7 weeks ago by
QX
• 0
0
votes
0
replies
1.7k
views
Comment:
Comment: Adding gene symbol to GRanges for calculation purposes
7 weeks ago by
QX
• 0
0
votes
1
reply
191
views
Adding gene to GRange objects with single base
GRanges
genomics
updated 7 weeks ago by
ATpoint
82k • written 7 weeks ago by
QX
• 0
0
votes
1
reply
199
views
SNP and Genes position matching dataframes in R
R
dataframe
updated 8 weeks ago by
dthorbur
★ 1.9k • written 8 weeks ago by
QX
• 0
2
votes
1
reply
176
views
Computing the neighborhood graph in single cell pipeline
single-cell
knn
updated 8 weeks ago by
ATpoint
82k • written 8 weeks ago by
QX
• 0
0
votes
1
reply
249
views
Visualize and access gvcf/vcf files
genomics
vcf
updated 9 weeks ago by
vinayjrao
▴ 250 • written 10 weeks ago by
QX
• 0
0
votes
0
replies
551
views
Comment:
Comment: batch effect correction in 10x genomics single cell sequencing
3 months ago by
QX
• 0
0
votes
3
replies
551
views
Comment:
Comment: batch effect correction in 10x genomics single cell sequencing
3 months ago by
QX
• 0
0
votes
0
replies
584
views
Comment:
Comment: problem with importing mtx file in scanpy
4 months ago by
QX
• 0
0
votes
2
replies
584
views
problem with importing mtx file in scanpy
scanpy
scRNAseq
4 months ago by
QX
• 0
0
votes
0
replies
852
views
Answer:
Answer: How can I call somatic CNV in tumor samples with no normal samples?
4 months ago by
QX
• 0
1
vote
1
reply
338
views
Variant calling using HaplotypeCaller does not show #FILTER information
Variant-calling
GATK
HaplotypeCaller
WGS
updated 4 months ago by
Ram
43k • written 4 months ago by
QX
• 0
0
votes
0
replies
430
views
Comment:
Comment: Execute R command on specific termimal
5 months ago by
QX
• 0
5
votes
2
replies
430
views
Execute R command on specific termimal
R
updated 5 months ago by
Ram
43k • written 5 months ago by
QX
• 0
0
votes
0
replies
798
views
Comment:
Comment: Downstream analysis with DEseq2 normalization
5 months ago by
QX
• 0
0
votes
1
reply
798
views
Comment:
Comment: Downstream analysis with DEseq2 normalization
5 months ago by
QX
• 0
0
votes
0
replies
477
views
Comment:
Comment: Normalization function in DEseq2
5 months ago by
QX
• 0
3
votes
4
replies
798
views
Downstream analysis with DEseq2 normalization
DEseq2
integration
5 months ago by
QX
• 0
4
votes
2
replies
477
views
Normalization function in DEseq2
DEseq2
5 months ago by
QX
• 0
0
votes
0
replies
237
views
What is the difference between CNV binning and aligning to gene?
CNV
transcriptomics
6 months ago by
QX
• 0
2
votes
1
reply
424
views
Integrate proteomics and scRNA-seq datasets
scRNA-seq
omics
protemics
updated 8 months ago by
bk11
★ 2.4k • written 8 months ago by
QX
• 0
1
vote
0
replies
659
views
Comment:
Comment: Integrate transcriptomics and CNV
9 months ago by
QX
• 0
0
votes
1
reply
659
views
Comment:
Comment: Integrate transcriptomics and CNV
9 months ago by
QX
• 0
3
votes
4
replies
659
views
Integrate transcriptomics and CNV
CNV
omics
9 months ago by
QX
• 0
0
votes
0
replies
254
views
Normalization of NGS data to make CNV calls
CNV
Normalization
WGS
9 months ago by
QX
• 0
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