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Answer: Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
20 months ago by Gordon Smyth ★ 8.4k
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Answer: Answer: MA graphs for EdgeR and Voom vary
20 months ago by Gordon Smyth ★ 8.4k
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3.4k
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Comment: Comment: Shrink logFC values after edgeR
20 months ago by Gordon Smyth ★ 8.4k
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Answer: Answer: Seeking Beginner-Friendly Resources for Deepening Understanding of Bioinformatic
20 months ago by Gordon Smyth ★ 8.4k
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2.8k
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Comment: Comment: Does the order of the batch variable matter in Limma design matrix?
20 months ago by Gordon Smyth ★ 8.4k
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Comment: Comment: Can one plot % of variance using the plotMDS function?
20 months ago by Gordon Smyth ★ 8.4k
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2.8k
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Answer: Answer: Does the order of the batch variable matter in Limma design matrix?
13 months ago by Gordon Smyth ★ 8.4k
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Answer: Answer: Bayesian Differential Expression
20 months ago by Gordon Smyth ★ 8.4k
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1.2k
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Comment: Comment: filtering lowly expressed reads
20 months ago by Gordon Smyth ★ 8.4k
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756
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Comment: Comment: Design matrix after RUVg correction
20 months ago by Gordon Smyth ★ 8.4k
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Comment: Comment: Converting LogCPM to raw counts for DESEQ2
20 months ago by Gordon Smyth ★ 8.4k
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Answer: Answer: EdgeR: upregulated with respect to what group?
21 months ago by Gordon Smyth ★ 8.4k
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2.2k
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Answer: Answer: Is there a program to average read counts from technical replicates?
21 months ago by Gordon Smyth ★ 8.4k
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1.6k
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Comment: Comment: How do I work out which condition the genes are down-regulated in?
21 months ago by Gordon Smyth ★ 8.4k
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1.6k
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Answer: Answer: How do I work out which condition the genes are down-regulated in?
21 months ago by Gordon Smyth ★ 8.4k
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2.1k
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Answer: Answer: positive and negative Fold Change glmLRT test
21 months ago by Gordon Smyth ★ 8.4k
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1.4k
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Answer: Answer: logFoldChange computed by EdgeR different from naive log2FCcomputed based on rea
21 months ago by Gordon Smyth ★ 8.4k
2
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3.4k
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Answer: Answer: Shrink logFC values after edgeR
21 months ago by Gordon Smyth ★ 8.4k
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1.7k
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Comment: Comment: Differing p-value cutoffs of limma derived DEGs in volcanoplots
21 months ago by Gordon Smyth ★ 8.4k
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1.7k
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Answer: Answer: Differing p-value cutoffs of limma derived DEGs in volcanoplots
21 months ago by Gordon Smyth ★ 8.4k
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811
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
21 months ago by Gordon Smyth ★ 8.4k
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738
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Comment: Comment: Gene expression of microarray data
21 months ago by Gordon Smyth ★ 8.4k
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1.5k
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Comment: Comment: Differential RNA editing using edgeR
21 months ago by Gordon Smyth ★ 8.4k
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1.5k
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Answer: Answer: Differential RNA editing using edgeR
21 months ago by Gordon Smyth ★ 8.4k
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1.4k
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Comment: Comment: how to start DEG analysis after featurecounts
22 months ago by Gordon Smyth ★ 8.4k
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3.7k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
18 months ago by Gordon Smyth ★ 8.4k
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3.7k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
22 months ago by Gordon Smyth ★ 8.4k
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3.7k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
22 months ago by Gordon Smyth ★ 8.4k
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1
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3.7k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
22 months ago by Gordon Smyth ★ 8.4k
1
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3.7k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
22 months ago by Gordon Smyth ★ 8.4k
1
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1
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3.7k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
22 months ago by Gordon Smyth ★ 8.4k
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3.7k
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Answer: Answer: how to test for differential expression in samples where a global increase in ge
22 months ago by Gordon Smyth ★ 8.4k
2
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0
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2.9k
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Answer: Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
23 months ago by Gordon Smyth ★ 8.4k
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1.1k
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Comment: Comment: featureCounts error???
23 months ago by Gordon Smyth ★ 8.4k
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1.5k
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Answer: Answer: Microarray data analysis with and without contrast
24 months ago by Gordon Smyth ★ 8.4k
2
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10k
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Comment: Comment: Illumina HumanHT-12 V4.0 expression beadchip
24 months ago by Gordon Smyth ★ 8.4k
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10k
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Answer: Answer: Illumina HumanHT-12 V4.0 expression beadchip
24 months ago by Gordon Smyth ★ 8.4k
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1
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2.1k
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Job: Laboratory Head Artificial Intelligence and Machine Learning (WEHI, Australia)
Australia machine-learning
24 months ago by Gordon Smyth ★ 8.4k
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2.1k
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Answer: Answer: Laboratory Head Artificial Intelligence and Machine Learning (WEHI, Australia)
24 months ago by Gordon Smyth ★ 8.4k
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2.3k
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Comment: Comment: Use limma for correlation analysis of RNA-seqdata and continous trait
2.1 years ago by Gordon Smyth ★ 8.4k
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2
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2.3k
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Answer: Answer: Use limma for correlation analysis of RNA-seqdata and continous trait
2.1 years ago by Gordon Smyth ★ 8.4k
2
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0
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3.0k
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Answer: Answer: Extracting Residuals from Differential Expression Model
2.1 years ago by Gordon Smyth ★ 8.4k
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1
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1.1k
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Answer: Answer: DGEList error in EdgeR - Warning: Error in $: $ operator is invalid for atomic v
2.2 years ago by Gordon Smyth ★ 8.4k
0
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2
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2.4k
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Answer: Answer: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
2.3 years ago by Gordon Smyth ★ 8.4k
1
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0
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2.9k
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Answer: Answer: Comparing P-Values & FDR adjusted p-values between RNA-Seq experiments?
2.3 years ago by Gordon Smyth ★ 8.4k
2
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1
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3.4k
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Comment: Comment: bar chart to show a p value of 0
2.3 years ago by Gordon Smyth ★ 8.4k
1
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2
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3.4k
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Comment: Comment: bar chart to show a p value of 0
2.3 years ago by Gordon Smyth ★ 8.4k
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1
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5.6k
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Comment: Comment: How to regress out age and sex using limma removeBatchEffect
2.3 years ago by Gordon Smyth ★ 8.4k
3
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1
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3.4k
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Answer: Answer: bar chart to show a p value of 0
2.3 years ago by Gordon Smyth ★ 8.4k
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1
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5.6k
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Comment: Comment: How to regress out age and sex using limma removeBatchEffect
2.3 years ago by Gordon Smyth ★ 8.4k
586 results • Page 3 of 12
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