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Comment: Comment: Design matrix after RUVg correction
19 months ago by Gordon Smyth ★ 8.3k
2
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4.7k
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Comment: Comment: Converting LogCPM to raw counts for DESEQ2
19 months ago by Gordon Smyth ★ 8.3k
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1.7k
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Answer: Answer: EdgeR: upregulated with respect to what group?
19 months ago by Gordon Smyth ★ 8.3k
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2.1k
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Answer: Answer: Is there a program to average read counts from technical replicates?
19 months ago by Gordon Smyth ★ 8.3k
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1.5k
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Comment: Comment: How do I work out which condition the genes are down-regulated in?
19 months ago by Gordon Smyth ★ 8.3k
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1.5k
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Answer: Answer: How do I work out which condition the genes are down-regulated in?
19 months ago by Gordon Smyth ★ 8.3k
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0
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2.1k
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Answer: Answer: positive and negative Fold Change glmLRT test
19 months ago by Gordon Smyth ★ 8.3k
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0
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1.3k
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Answer: Answer: logFoldChange computed by EdgeR different from naive log2FCcomputed based on rea
19 months ago by Gordon Smyth ★ 8.3k
2
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1
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3.1k
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Answer: Answer: Shrink logFC values after edgeR
19 months ago by Gordon Smyth ★ 8.3k
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1
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1.6k
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Comment: Comment: Differing p-value cutoffs of limma derived DEGs in volcanoplots
19 months ago by Gordon Smyth ★ 8.3k
3
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1
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1.6k
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Answer: Answer: Differing p-value cutoffs of limma derived DEGs in volcanoplots
19 months ago by Gordon Smyth ★ 8.3k
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751
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
20 months ago by Gordon Smyth ★ 8.3k
1
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0
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672
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Comment: Comment: Gene expression of microarray data
20 months ago by Gordon Smyth ★ 8.3k
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1
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1.4k
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Comment: Comment: Differential RNA editing using edgeR
20 months ago by Gordon Smyth ★ 8.3k
2
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1
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1.4k
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Answer: Answer: Differential RNA editing using edgeR
20 months ago by Gordon Smyth ★ 8.3k
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1
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1.3k
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Comment: Comment: how to start DEG analysis after featurecounts
20 months ago by Gordon Smyth ★ 8.3k
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0
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3.5k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
16 months ago by Gordon Smyth ★ 8.3k
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1
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3.5k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
21 months ago by Gordon Smyth ★ 8.3k
0
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0
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3.5k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
21 months ago by Gordon Smyth ★ 8.3k
0
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1
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3.5k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
21 months ago by Gordon Smyth ★ 8.3k
1
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0
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3.5k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
21 months ago by Gordon Smyth ★ 8.3k
1
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1
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3.5k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
21 months ago by Gordon Smyth ★ 8.3k
1
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2
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3.5k
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Answer: Answer: how to test for differential expression in samples where a global increase in ge
21 months ago by Gordon Smyth ★ 8.3k
2
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0
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2.7k
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Answer: Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
21 months ago by Gordon Smyth ★ 8.3k
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0
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1.1k
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Comment: Comment: featureCounts error???
22 months ago by Gordon Smyth ★ 8.3k
3
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1
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1.4k
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Answer: Answer: Microarray data analysis with and without contrast
22 months ago by Gordon Smyth ★ 8.3k
2
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0
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10.0k
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Comment: Comment: Illumina HumanHT-12 V4.0 expression beadchip
22 months ago by Gordon Smyth ★ 8.3k
1
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1
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10.0k
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Answer: Answer: Illumina HumanHT-12 V4.0 expression beadchip
22 months ago by Gordon Smyth ★ 8.3k
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1
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2.0k
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Job: Laboratory Head Artificial Intelligence and Machine Learning (WEHI, Australia)
Australia machine-learning
22 months ago by Gordon Smyth ★ 8.3k
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0
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2.0k
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Answer: Answer: Laboratory Head Artificial Intelligence and Machine Learning (WEHI, Australia)
22 months ago by Gordon Smyth ★ 8.3k
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1
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2.2k
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Comment: Comment: Use limma for correlation analysis of RNA-seqdata and continous trait
2.0 years ago by Gordon Smyth ★ 8.3k
1
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2
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2.2k
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Answer: Answer: Use limma for correlation analysis of RNA-seqdata and continous trait
2.0 years ago by Gordon Smyth ★ 8.3k
2
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0
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2.9k
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Answer: Answer: Extracting Residuals from Differential Expression Model
2.0 years ago by Gordon Smyth ★ 8.3k
1
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1
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1.1k
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Answer: Answer: DGEList error in EdgeR - Warning: Error in $: $ operator is invalid for atomic v
2.1 years ago by Gordon Smyth ★ 8.3k
0
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2
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2.2k
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Answer: Answer: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
2.2 years ago by Gordon Smyth ★ 8.3k
1
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0
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2.7k
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Answer: Answer: Comparing P-Values & FDR adjusted p-values between RNA-Seq experiments?
2.2 years ago by Gordon Smyth ★ 8.3k
2
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1
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3.2k
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Comment: Comment: bar chart to show a p value of 0
2.2 years ago by Gordon Smyth ★ 8.3k
1
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2
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3.2k
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Comment: Comment: bar chart to show a p value of 0
2.2 years ago by Gordon Smyth ★ 8.3k
0
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1
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5.3k
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Comment: Comment: How to regress out age and sex using limma removeBatchEffect
2.2 years ago by Gordon Smyth ★ 8.3k
3
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1
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3.2k
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Answer: Answer: bar chart to show a p value of 0
2.2 years ago by Gordon Smyth ★ 8.3k
0
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1
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5.3k
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Comment: Comment: How to regress out age and sex using limma removeBatchEffect
2.2 years ago by Gordon Smyth ★ 8.3k
2
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1
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4.2k
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Answer: Answer: How do I correctly format my limma/eBayes code?
2.2 years ago by Gordon Smyth ★ 8.3k
0
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0
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2.8k
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Answer: Answer: How do I run DE for TPM values (not CPM)?
2.3 years ago by Gordon Smyth ★ 8.3k
0
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1
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4.2k
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Comment: Comment: How do I correctly format my limma/eBayes code?
2.3 years ago by Gordon Smyth ★ 8.3k
0
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2
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4.7k
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Comment: Comment: Limma returned only positive logFC values
2.3 years ago by Gordon Smyth ★ 8.3k
0
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1
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4.7k
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Comment: Comment: Limma returned only positive logFC values
2.3 years ago by Gordon Smyth ★ 8.3k
2
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1
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4.7k
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Answer: Answer: Limma returned only positive logFC values
2.3 years ago by Gordon Smyth ★ 8.3k
2
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1
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4.7k
views
Comment: Comment: Limma returned only positive logFC values
2.3 years ago by Gordon Smyth ★ 8.3k
3
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2
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8.0k
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Comment: Comment: What are the advantages of using the T2T as a reference vs GRCh38 today?
2.3 years ago by Gordon Smyth ★ 8.3k
2
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0
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1.4k
views
Answer: Answer: coef /makeContrasts very different results
2.3 years ago by Gordon Smyth ★ 8.3k
577 results • Page 3 of 12
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