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Comment: Comment: Filtering bad quality probes in illumina microarray data
2.8 years ago by Gordon Smyth ★ 8.3k
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2.6k
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Answer: Answer: Filtering bad quality probes in illumina microarray data
2.8 years ago by Gordon Smyth ★ 8.3k
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1.7k
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Answer: Answer: is normalize RNA seq raw counts used correctly?
2.9 years ago by Gordon Smyth ★ 8.3k
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1
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2.4k
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Comment: Comment: Question about edgeR GLM funcionality
2.9 years ago by Gordon Smyth ★ 8.3k
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1.6k
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Answer: Answer: Can I run EdgeR or DESeq2 on bimodal data caused by batch effect?
2.9 years ago by Gordon Smyth ★ 8.3k
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1
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2.4k
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Answer: Answer: Question about edgeR GLM funcionality
2.9 years ago by Gordon Smyth ★ 8.3k
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0
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906
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Answer: Answer: EdgeR: apply minimum cpm threshold only to certain samples
2.9 years ago by Gordon Smyth ★ 8.3k
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1
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1.8k
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Comment: Comment: How to apply two tailed paired t-test in limma for DEGs selection?
2.9 years ago by Gordon Smyth ★ 8.3k
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2.2k
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Answer: Answer: How to perform paired t-test in R for obtaining p-value of each gene?
2.9 years ago by Gordon Smyth ★ 8.3k
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1.8k
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Answer: Answer: How to apply two tailed paired t-test in limma for DEGs selection?
2.9 years ago by Gordon Smyth ★ 8.3k
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2.0k
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Comment: Comment: A check over my code using Limma DE, starting from normalized data
2.9 years ago by Gordon Smyth ★ 8.3k
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1.8k
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Answer: Answer: HELP- analysis RNa-seq from GEO
2.9 years ago by Gordon Smyth ★ 8.3k
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1.6k
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Comment: Comment: Reads mapping to pseudogenes using RSubread
3.0 years ago by Gordon Smyth ★ 8.3k
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1
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1.1k
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Answer: Answer: Microarray DEG analysis visualisation
3.0 years ago by Gordon Smyth ★ 8.3k
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0
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1.6k
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Answer: Answer: Reads mapping to pseudogenes using RSubread
3.0 years ago by Gordon Smyth ★ 8.3k
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0
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2.1k
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Comment: Comment: EDAseq, edgeR libraries cannot be installed in M2 mac
3.0 years ago by Gordon Smyth ★ 8.3k
1
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0
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1.8k
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Answer: Answer: Create the design matrix for limma differential expression analysis.
3.0 years ago by Gordon Smyth ★ 8.3k
1
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1
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2.1k
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Answer: Answer: EDAseq, edgeR libraries cannot be installed in M2 mac
3.0 years ago by Gordon Smyth ★ 8.3k
1
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0
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2.4k
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Comment: Comment: Same results in Limma Toptable as in DESEQ2 results
3.0 years ago by Gordon Smyth ★ 8.3k
4
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1
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2.4k
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Answer: Answer: Same results in Limma Toptable as in DESEQ2 results
3.0 years ago by Gordon Smyth ★ 8.3k
1
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1
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5.2k
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Comment: Comment: Limma Differential Expression contrast matrix with several variables
3.0 years ago by Gordon Smyth ★ 8.3k
1
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1
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5.2k
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Answer: Answer: Limma Differential Expression contrast matrix with several variables
3.0 years ago by Gordon Smyth ★ 8.3k
1
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0
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2.4k
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Comment: Comment: Obtaining p-value and fold-change from a table
3.1 years ago by Gordon Smyth ★ 8.3k
3
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1
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2.4k
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Answer: Answer: Obtaining p-value and fold-change from a table
3.1 years ago by Gordon Smyth ★ 8.3k
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3.0k
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Comment: Comment: Warning - longer object length is not a multiple of shorter object length
3.1 years ago by Gordon Smyth ★ 8.3k
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1
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3.0k
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Comment: Comment: Warning - longer object length is not a multiple of shorter object length
3.1 years ago by Gordon Smyth ★ 8.3k
2
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1
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1.2k
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Answer: Answer: When is the correct timing to perform edgeR cpm calculation?
3.1 years ago by Gordon Smyth ★ 8.3k
2
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1
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2.2k
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Comment: Comment: Is there any journal article to reference removeBatchEffect function from Limma?
3.1 years ago by Gordon Smyth ★ 8.3k
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1
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2.4k
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Comment: Comment: scRNA-seq: depositing count matrix without providing raw data
3.2 years ago by Gordon Smyth ★ 8.3k
1
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1
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2.4k
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Comment: Comment: scRNA-seq: depositing count matrix without providing raw data
3.2 years ago by Gordon Smyth ★ 8.3k
3
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0
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2.4k
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Answer: Answer: scRNA-seq: depositing count matrix without providing raw data
3.2 years ago by Gordon Smyth ★ 8.3k
1
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0
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1.7k
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Answer: Answer: Include DEGs with a -l2fc in overrepresentation analysis?
3.2 years ago by Gordon Smyth ★ 8.3k
1
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1
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1.4k
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Comment: Comment: Logfold change
3.2 years ago by Gordon Smyth ★ 8.3k
2
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0
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1.6k
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Comment: Comment: load csv file to edgeR
3.2 years ago by Gordon Smyth ★ 8.3k
1
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0
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1.6k
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Answer: Answer: load csv file to edgeR
3.2 years ago by Gordon Smyth ★ 8.3k
2
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1
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5.7k
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Answer: Answer: File not in gzip format
3.2 years ago by Gordon Smyth ★ 8.3k
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1
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3.0k
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Comment: Comment: Hi everyone. I want to know how to analysis genes data by using "Welch t test, W
3.3 years ago by Gordon Smyth ★ 8.3k
1
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1
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3.7k
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Comment: Comment: [R] How to make Contrast for Differential Expressed with more classes than 2
3.3 years ago by Gordon Smyth ★ 8.3k
1
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1
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3.7k
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Comment: Comment: [R] How to make Contrast for Differential Expressed with more classes than 2
3.3 years ago by Gordon Smyth ★ 8.3k
1
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0
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3.7k
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Comment: Comment: [R] How to make Contrast for Differential Expressed with more classes than 2
3.3 years ago by Gordon Smyth ★ 8.3k
0
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1
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3.7k
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Comment: Comment: [R] How to make Contrast for Differential Expressed with more classes than 2
3.3 years ago by Gordon Smyth ★ 8.3k
6
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1
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3.7k
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Answer: Answer: [R] How to make Contrast for Differential Expressed with more classes than 2
3.3 years ago by Gordon Smyth ★ 8.3k
1
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0
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1.5k
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Comment: Comment: comparing fragmented RNA-seq to non-fragmented RNA-seq
3.3 years ago by Gordon Smyth ★ 8.3k
1
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1
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1.5k
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Answer: Answer: comparing fragmented RNA-seq to non-fragmented RNA-seq
3.3 years ago by Gordon Smyth ★ 8.3k
1
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1
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1.8k
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Answer: Answer: limma voom -- all genes after filtering are differentially expressed
3.3 years ago by Gordon Smyth ★ 8.3k
4
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2
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1.4k
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Answer: Answer: Error when using edgeR with only two samples
3.3 years ago by Gordon Smyth ★ 8.3k
1
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0
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866
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Answer: Answer: exact counts tables for limma voom guide
3.3 years ago by Gordon Smyth ★ 8.3k
1
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0
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1.8k
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Answer: Answer: Limma voom with missing values from mass spectrometry
3.3 years ago by Gordon Smyth ★ 8.3k
2
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1
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2.2k
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Comment: Comment: Limma for paired and unpaired samples. Strange number of DEGs in unpaired sample
3.3 years ago by Gordon Smyth ★ 8.3k
0
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0
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2.2k
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Comment: Comment: Limma for paired and unpaired samples. Strange number of DEGs in unpaired sample
3.3 years ago by Gordon Smyth ★ 8.3k
577 results • Page 5 of 12
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