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Comment: Comment: how to test for differential expression in samples where a global increase in ge
5 months ago by Gordon Smyth ★ 7.2k
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1.7k
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Answer: Answer: how to test for differential expression in samples where a global increase in ge
5 months ago by Gordon Smyth ★ 7.2k
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0
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1.6k
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Answer: Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
5 months ago by Gordon Smyth ★ 7.2k
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538
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Comment: Comment: featureCounts error???
6 months ago by Gordon Smyth ★ 7.2k
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706
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Answer: Answer: Microarray data analysis with and without contrast
6 months ago by Gordon Smyth ★ 7.2k
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6.7k
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Comment: Comment: Illumina HumanHT-12 V4.0 expression beadchip
6 months ago by Gordon Smyth ★ 7.2k
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6.7k
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Answer: Answer: Illumina HumanHT-12 V4.0 expression beadchip
6 months ago by Gordon Smyth ★ 7.2k
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1.5k
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Job: Laboratory Head Artificial Intelligence and Machine Learning (WEHI, Australia)
Australia machine-learning
6 months ago by Gordon Smyth ★ 7.2k
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1.5k
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Answer: Answer: Laboratory Head Artificial Intelligence and Machine Learning (WEHI, Australia)
6 months ago by Gordon Smyth ★ 7.2k
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814
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Comment: Comment: Use limma for correlation analysis of RNA-seqdata and continous trait
8 months ago by Gordon Smyth ★ 7.2k
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1
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814
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Answer: Answer: Use limma for correlation analysis of RNA-seqdata and continous trait
8 months ago by Gordon Smyth ★ 7.2k
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2.1k
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Answer: Answer: Extracting Residuals from Differential Expression Model
8 months ago by Gordon Smyth ★ 7.2k
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627
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Answer: Answer: DGEList error in EdgeR - Warning: Error in $: $ operator is invalid for atomic v
9 months ago by Gordon Smyth ★ 7.2k
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2
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1.2k
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Answer: Answer: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
10 months ago by Gordon Smyth ★ 7.2k
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0
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1.3k
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Answer: Answer: Comparing P-Values & FDR adjusted p-values between RNA-Seq experiments?
10 months ago by Gordon Smyth ★ 7.2k
2
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1
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1.7k
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Comment: Comment: bar chart to show a p value of 0
10 months ago by Gordon Smyth ★ 7.2k
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2
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1.7k
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Comment: Comment: bar chart to show a p value of 0
10 months ago by Gordon Smyth ★ 7.2k
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1
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3.4k
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Comment: Comment: How to regress out age and sex using limma removeBatchEffect
10 months ago by Gordon Smyth ★ 7.2k
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1
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1.7k
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Answer: Answer: bar chart to show a p value of 0
10 months ago by Gordon Smyth ★ 7.2k
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1
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3.4k
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Comment: Comment: How to regress out age and sex using limma removeBatchEffect
10 months ago by Gordon Smyth ★ 7.2k
2
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1
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2.4k
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Answer: Answer: How do I correctly format my limma/eBayes code?
11 months ago by Gordon Smyth ★ 7.2k
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0
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1.4k
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Answer: Answer: How do I run DE for TPM values (not CPM)?
11 months ago by Gordon Smyth ★ 7.2k
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1
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2.4k
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Comment: Comment: How do I correctly format my limma/eBayes code?
11 months ago by Gordon Smyth ★ 7.2k
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2
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2.7k
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Comment: Comment: Limma returned only positive logFC values
11 months ago by Gordon Smyth ★ 7.2k
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2.7k
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Comment: Comment: Limma returned only positive logFC values
11 months ago by Gordon Smyth ★ 7.2k
2
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1
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2.7k
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Answer: Answer: Limma returned only positive logFC values
11 months ago by Gordon Smyth ★ 7.2k
2
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1
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2.7k
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Comment: Comment: Limma returned only positive logFC values
11 months ago by Gordon Smyth ★ 7.2k
3
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1
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4.5k
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Comment: Comment: What are the advantages of using the T2T as a reference vs GRCh38 today?
11 months ago by Gordon Smyth ★ 7.2k
2
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0
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830
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Answer: Answer: coef /makeContrasts very different results
12 months ago by Gordon Smyth ★ 7.2k
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2.2k
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Comment: Comment: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
12 months ago by Gordon Smyth ★ 7.2k
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1
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2.2k
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Comment: Comment: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
12 months ago by Gordon Smyth ★ 7.2k
1
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1
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1.1k
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Comment: Comment: Having problem on doing edgeR anlysis- cant create the DGE list through readbism
12 months ago by Gordon Smyth ★ 7.2k
1
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1
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1.1k
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Answer: Answer: Having problem on doing edgeR anlysis- cant create the DGE list through readbism
12 months ago by Gordon Smyth ★ 7.2k
5
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1.4k
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Answer: Answer: LIMMA: where to find the ANOVA?
12 months ago by Gordon Smyth ★ 7.2k
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0
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3.8k
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Comment: Comment: edgeR, Pseudobulk scRNA-seq
13 months ago by Gordon Smyth ★ 7.2k
2
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3.8k
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Answer: Answer: edgeR, Pseudobulk scRNA-seq
13 months ago by Gordon Smyth ★ 7.2k
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1
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618
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Answer: Answer: Is it possible to use limma to simultaneously analyze RNA-seq and gene expressio
13 months ago by Gordon Smyth ★ 7.2k
8
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1
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4.5k
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Answer: Answer: What are the advantages of using the T2T as a reference vs GRCh38 today?
13 months ago by Gordon Smyth ★ 7.2k
2
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1
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2.2k
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Comment: Comment: Limma: is it necessary to log-transform the data?
12 months ago by Gordon Smyth ★ 7.2k
2
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1
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2.2k
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Comment: Comment: Limma: is it necessary to log-transform the data?
13 months ago by Gordon Smyth ★ 7.2k
4
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1
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2.2k
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Answer: Answer: Limma: is it necessary to log-transform the data?
12 months ago by Gordon Smyth ★ 7.2k
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0
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573
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Answer: Answer: "align" in rsubread only reading 1 out of 6 of my input files
13 months ago by Gordon Smyth ★ 7.2k
4
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0
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1.1k
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Answer: Answer: RNA-seq analysis without replicates
13 months ago by Gordon Smyth ★ 7.2k
7
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985
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Answer: Answer: How to "guess" the transformation based on already-transformed, "normalized coun
13 months ago by Gordon Smyth ★ 7.2k
3
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0
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645
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Answer: Answer: How to Merge RNA Replicates
13 months ago by Gordon Smyth ★ 7.2k
2
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1
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809
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Answer: Answer: suprisingly high logFC using limma
13 months ago by Gordon Smyth ★ 7.2k
3
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1
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1.5k
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Answer: Answer: extract gene coordinates and TSS from gene list
13 months ago by Gordon Smyth ★ 7.2k
1
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1
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1.5k
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Answer: Answer: How to remove unknown batch-batch effects from GEO datasets
13 months ago by Gordon Smyth ★ 7.2k
2
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1
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4.8k
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Comment: Comment: Get TPM from RNA counts and gene length?
14 months ago by Gordon Smyth ★ 7.2k
0
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0
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4.8k
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Comment: Comment: Get TPM from RNA counts and gene length?
14 months ago by Gordon Smyth ★ 7.2k
506 results • Page 2 of 11
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