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Comment: Comment: Limma Analysis Agilent Microarray Data (GPL1708)
3 days ago by Gordon Smyth ★ 7.1k
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252
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Comment: Comment: permutation test in edgeR
10 days ago by Gordon Smyth ★ 7.1k
1
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0
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434
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Comment: Comment: Difference when using difference number of pathways score to compare between 3 g
11 days ago by Gordon Smyth ★ 7.1k
1
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1
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426
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Comment: Comment: Limma compare between 3 conditions vs 2 conditions
15 days ago by Gordon Smyth ★ 7.1k
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0
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1.0k
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Comment: Comment: Shrink logFC values after edgeR
5 weeks ago by Gordon Smyth ★ 7.1k
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1
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475
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Comment: Comment: 'Invalid parameter' error to generate a count matrix using featurecounts
6 weeks ago by Gordon Smyth ★ 7.1k
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0
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449
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Comment: Comment: Differential express genes in imbalance groups
6 weeks ago by Gordon Smyth ★ 7.1k
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0
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218
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Comment: Comment: Computing mid parent value for DE analysis
7 weeks ago by Gordon Smyth ★ 7.1k
2
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0
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1.0k
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Comment: Comment: Shrink logFC values after edgeR
8 weeks ago by Gordon Smyth ★ 7.1k
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0
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465
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Comment: Comment: Does the order of the batch variable matter in Limma design matrix?
8 weeks ago by Gordon Smyth ★ 7.1k
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0
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3.8k
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Comment: Comment: Can one plot % of variance using the plotMDS function?
8 weeks ago by Gordon Smyth ★ 7.1k
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0
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453
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Comment: Comment: filtering lowly expressed reads
12 weeks ago by Gordon Smyth ★ 7.1k
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0
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237
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Comment: Comment: Design matrix after RUVg correction
12 weeks ago by Gordon Smyth ★ 7.1k
2
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0
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2.8k
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Comment: Comment: Converting LogCPM to raw counts for DESEQ2
12 weeks ago by Gordon Smyth ★ 7.1k
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0
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904
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Comment: Comment: How do I work out which condition the genes are down-regulated in?
12 weeks ago by Gordon Smyth ★ 7.1k
1
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1
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487
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Comment: Comment: Differing p-value cutoffs of limma derived DEGs in volcanoplots
3 months ago by Gordon Smyth ★ 7.1k
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0
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305
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago by Gordon Smyth ★ 7.1k
1
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0
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276
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Comment: Comment: Gene expression of microarray data
3 months ago by Gordon Smyth ★ 7.1k
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1
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578
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Comment: Comment: Differential RNA editing using edgeR
3 months ago by Gordon Smyth ★ 7.1k
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1
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515
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Comment: Comment: how to start DEG analysis after featurecounts
3 months ago by Gordon Smyth ★ 7.1k
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0
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1.6k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
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1
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1.6k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
0
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0
replies
1.6k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
0
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1
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1.6k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
1
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0
replies
1.6k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
1
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1
reply
1.6k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
0
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0
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524
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Comment: Comment: featureCounts error???
5 months ago by Gordon Smyth ★ 7.1k
2
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0
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6.7k
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Comment: Comment: Illumina HumanHT-12 V4.0 expression beadchip
6 months ago by Gordon Smyth ★ 7.1k
0
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1
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796
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Comment: Comment: Use limma for correlation analysis of RNA-seqdata and continous trait
7 months ago by Gordon Smyth ★ 7.1k
2
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1
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1.7k
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Comment: Comment: bar chart to show a p value of 0
10 months ago by Gordon Smyth ★ 7.1k
1
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2
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1.7k
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Comment: Comment: bar chart to show a p value of 0
10 months ago by Gordon Smyth ★ 7.1k
0
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1
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3.3k
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Comment: Comment: How to regress out age and sex using limma removeBatchEffect
10 months ago by Gordon Smyth ★ 7.1k
0
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1
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3.3k
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Comment: Comment: How to regress out age and sex using limma removeBatchEffect
10 months ago by Gordon Smyth ★ 7.1k
0
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1
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2.4k
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Comment: Comment: How do I correctly format my limma/eBayes code?
10 months ago by Gordon Smyth ★ 7.1k
0
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2
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2.7k
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Comment: Comment: Limma returned only positive logFC values
10 months ago by Gordon Smyth ★ 7.1k
0
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1
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2.7k
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Comment: Comment: Limma returned only positive logFC values
10 months ago by Gordon Smyth ★ 7.1k
2
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1
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2.7k
views
Comment: Comment: Limma returned only positive logFC values
11 months ago by Gordon Smyth ★ 7.1k
3
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1
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4.5k
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Comment: Comment: What are the advantages of using the T2T as a reference vs GRCh38 today?
11 months ago by Gordon Smyth ★ 7.1k
0
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0
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2.2k
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Comment: Comment: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
12 months ago by Gordon Smyth ★ 7.1k
1
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1
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2.2k
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Comment: Comment: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
12 months ago by Gordon Smyth ★ 7.1k
1
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1
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1.0k
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Comment: Comment: Having problem on doing edgeR anlysis- cant create the DGE list through readbism
12 months ago by Gordon Smyth ★ 7.1k
1
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0
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3.7k
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Comment: Comment: edgeR, Pseudobulk scRNA-seq
12 months ago by Gordon Smyth ★ 7.1k
2
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1
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2.1k
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Comment: Comment: Limma: is it necessary to log-transform the data?
12 months ago by Gordon Smyth ★ 7.1k
2
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1
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2.1k
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Comment: Comment: Limma: is it necessary to log-transform the data?
13 months ago by Gordon Smyth ★ 7.1k
2
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1
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4.6k
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Comment: Comment: Get TPM from RNA counts and gene length?
14 months ago by Gordon Smyth ★ 7.1k
0
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0
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4.6k
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Comment: Comment: Get TPM from RNA counts and gene length?
14 months ago by Gordon Smyth ★ 7.1k
0
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0
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2.1k
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Comment: Comment: Limma for batch effect correction
14 months ago by Gordon Smyth ★ 7.1k
1
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1
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4.6k
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Comment: Comment: Get TPM from RNA counts and gene length?
14 months ago by Gordon Smyth ★ 7.1k
0
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1
reply
4.6k
views
Comment: Comment: Get TPM from RNA counts and gene length?
14 months ago by Gordon Smyth ★ 7.1k
0
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0
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5.6k
views
Comment: Comment: Limma package, how to correct by age and sex?
14 months ago by Gordon Smyth ★ 7.1k
210 results • Page 1 of 5
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