Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
0
votes
0
replies
4.8k
views
Comment:
Comment: Get TPM from RNA counts and gene length?
14 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
2.1k
views
Comment:
Comment: Limma for batch effect correction
14 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
4.8k
views
Comment:
Comment: Get TPM from RNA counts and gene length?
15 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
4.8k
views
Comment:
Comment: Get TPM from RNA counts and gene length?
15 months ago by
Gordon Smyth
★ 7.2k
4
votes
1
reply
4.8k
views
Answer:
Answer: Get TPM from RNA counts and gene length?
15 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
5.6k
views
Comment:
Comment: Limma package, how to correct by age and sex?
15 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
604
views
Answer:
Answer: How to decide the best threshold for filtering probes in limma
15 months ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
579
views
Answer:
Answer: How should I interpret FB_Plot in microarray analysis?
15 months ago by
Gordon Smyth
★ 7.2k
3
votes
0
replies
1.1k
views
Answer:
Answer: How should I deduce the variable from its variance and expectation in the `voom`
15 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
2.1k
views
Answer:
Answer: Limma for batch effect correction
15 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
680
views
Answer:
Answer: interpreting voom mean variance plots with large BCV and faint kink
15 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
720
views
Answer:
Answer: finding error to run edgeR, error in ploting MDS and after that in model matrix
15 months ago by
Gordon Smyth
★ 7.2k
6
votes
0
replies
2.2k
views
Answer:
Answer: Hugely different results between edgeR and DESeq2
15 months ago by
Gordon Smyth
★ 7.2k
2
votes
0
replies
1.0k
views
Answer:
Answer: Processed RNA seq data publicly available
16 months ago by
Gordon Smyth
★ 7.2k
3
votes
0
replies
1.6k
views
Answer:
Answer: R is assigning unique identifier to the same column names when reading in as a d
16 months ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
1.8k
views
Answer:
Answer: R programmin RNA seq
16 months ago by
Gordon Smyth
★ 7.2k
3
votes
0
replies
1.9k
views
Comment:
Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
16 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
621
views
Comment:
Comment: GSA type of input data
16 months ago by
Gordon Smyth
★ 7.2k
1
vote
2
replies
1.9k
views
Comment:
Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
16 months ago by
Gordon Smyth
★ 7.2k
4
votes
1
reply
1.9k
views
Answer:
Answer: How to make contrasts to find genes DE in one experimental group but NOT in othe
16 months ago by
Gordon Smyth
★ 7.2k
2
votes
0
replies
1.1k
views
Answer:
Answer: Strange results from limma output
17 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
1.2k
views
Comment:
Comment: Accounting for differential abundance in differential expression in scRNAseq
17 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
1.2k
views
Answer:
Answer: Accounting for differential abundance in differential expression in scRNAseq
17 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
1.4k
views
Comment:
Comment: How to remove duplicate rows by averaging their values having 1 million rows X 1
17 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
1.4k
views
Answer:
Answer: How to remove duplicate rows by averaging their values having 1 million rows X 1
17 months ago by
Gordon Smyth
★ 7.2k
5
votes
1
reply
2.5k
views
Answer:
Answer: Different featureCounts data using GTF annotation file from two different source
17 months ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
483
views
Answer:
Answer: microarray differential expression analyses
18 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
2.5k
views
Comment:
Comment: Error input data must be numeric in R, how to solve it?
18 months ago by
Gordon Smyth
★ 7.2k
2
votes
1
reply
2.5k
views
Answer:
Answer: Error input data must be numeric in R, how to solve it?
18 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
1.6k
views
Comment:
Comment: Filtering bad quality probes in illumina microarray data
18 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
1.6k
views
Comment:
Comment: Filtering bad quality probes in illumina microarray data
18 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
1.6k
views
Answer:
Answer: Filtering bad quality probes in illumina microarray data
18 months ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
961
views
Answer:
Answer: is normalize RNA seq raw counts used correctly?
18 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
1.4k
views
Comment:
Comment: Question about edgeR GLM funcionality
18 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
1.2k
views
Answer:
Answer: Can I run EdgeR or DESeq2 on bimodal data caused by batch effect?
18 months ago by
Gordon Smyth
★ 7.2k
2
votes
1
reply
1.4k
views
Answer:
Answer: Question about edgeR GLM funcionality
18 months ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
519
views
Answer:
Answer: EdgeR: apply minimum cpm threshold only to certain samples
19 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
1.2k
views
Comment:
Comment: How to apply two tailed paired t-test in limma for DEGs selection?
19 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
1.3k
views
Answer:
Answer: How to perform paired t-test in R for obtaining p-value of each gene?
19 months ago by
Gordon Smyth
★ 7.2k
0
votes
1
reply
1.2k
views
Answer:
Answer: How to apply two tailed paired t-test in limma for DEGs selection?
19 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
1.3k
views
Comment:
Comment: A check over my code using Limma DE, starting from normalized data
19 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
995
views
Answer:
Answer: HELP- analysis RNa-seq from GEO
19 months ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
932
views
Comment:
Comment: Reads mapping to pseudogenes using RSubread
19 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
733
views
Answer:
Answer: Microarray DEG analysis visualisation
19 months ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
932
views
Answer:
Answer: Reads mapping to pseudogenes using RSubread
19 months ago by
Gordon Smyth
★ 7.2k
0
votes
0
replies
1.5k
views
Comment:
Comment: EDAseq, edgeR libraries cannot be installed in M2 mac
19 months ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
1.1k
views
Answer:
Answer: Create the design matrix for limma differential expression analysis.
19 months ago by
Gordon Smyth
★ 7.2k
1
vote
1
reply
1.5k
views
Answer:
Answer: EDAseq, edgeR libraries cannot be installed in M2 mac
19 months ago by
Gordon Smyth
★ 7.2k
1
vote
0
replies
1.5k
views
Comment:
Comment: Same results in Limma Toptable as in DESEQ2 results
20 months ago by
Gordon Smyth
★ 7.2k
4
votes
1
reply
1.5k
views
Answer:
Answer: Same results in Limma Toptable as in DESEQ2 results
20 months ago by
Gordon Smyth
★ 7.2k
507 results • Page
3 of 11
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6