User: Abdul Rafay Khan

Reputation:
910
Status:
Trusted
Location:
Karachi, PK
Last seen:
3 weeks, 1 day ago
Joined:
4 years, 4 months ago
Email:
a**********@gmail.com

Contact: alrafaykhan@gmail.com

Posts by Abdul Rafay Khan

<prev • 68 results • page 1 of 7 • next >
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Gerp++ installation error
... I am trying to compile gerp++ source code on Ubuntu 18.04.1 LTS but i am getting error using make command. sudo make g++ -Wall -W -pedantic -O4 -c MIter.cc g++ -Wall -W -pedantic -O4 -c Mseq.cc Mseq.cc: In member function ‘Vec Mseq::getAlignment(Seq::size_type, Seq::size_type) const ...
gerp++ gerp2 gerp snp written 22 days ago by Abdul Rafay Khan910 • updated 15 days ago by Biostar ♦♦ 20
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Comment: C: GATK gradlew bundle Error
... Thank you dariober, it works sudo apt-get update sudo apt-get install openjdk-8-jdk sudo update-alternatives --config java sudo update-alternatives --config javac and enter the number for which JDK to use of your choice. ...
written 10 months ago by Abdul Rafay Khan910
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GATK gradlew bundle Error
... While building gatk sudo ./gradlew bundle > Downloading > https://services.gradle.org/distributions/gradle-3.1-bin.zip > > Exception in thread "main" javax.net.ssl.SSLException: > java.security.ProviderException: java.security.InvalidKeyException: EC > parameters error at & ...
software error gatk written 10 months ago by Abdul Rafay Khan910 • updated 10 months ago by dariober9.9k
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GATK (Cannot find '.git' directory)
... Issue while Building GATK4 sudo ./gradlew bundle Starting a Gradle Daemon, 1 incompatible and 1 stopped Daemons could not be reused, use --status for details FAILURE: Build failed with an exception. Where: Build file '/home/rafay/gatk-4.0.2.0/build.gradle' line: 289 What went wrong: A problem oc ...
gatk written 11 months ago by Abdul Rafay Khan910
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Forum: Best book for learning Next-Generation Sequencing Data Analysis?
... Looking for a book which covers all aspect of Next-Generation Sequencing Data Analysis and can be add in academic course for students. ...
ngs forum written 11 months ago by Abdul Rafay Khan910 • updated 11 weeks ago by h.mon23k
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Does BWA mem work with uBAM file?
... I want to align my uBAM files using bwa mem. Does BWA mem works with uBAM files? ...
ubam bwa mem bwa align written 12 months ago by Abdul Rafay Khan910
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Mean coverage in Ion Torrent PGM
... Is there any way to calculate the mean coverage of each amplicon in a whole run (in 16 or 32 samples)? ...
ion torrent ngs coverage written 12 months ago by Abdul Rafay Khan910 • updated 12 months ago by vmicrobio240
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Python script error
... > File "dna2prot2-working-test-Copy.py", line 29, in print > (entry.seq).translate()#This will translate nucleotide sequence to > amino acid sequence AttributeError: 'NoneType' object has no attribute > 'translate' Code: import sys from Bio import SeqIO f ...
python biopython written 13 months ago by Abdul Rafay Khan910 • updated 13 months ago by Selenocysteine530
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De novo sequencing?
... Why do we required de novo sequencing if almost all the organisms are being sequenced? Why Don't we only focus on reference based sequencing? ...
de novo sequencing written 15 months ago by Abdul Rafay Khan910
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Questions related assembly algorithms?
... 1) What is the overarching challenges in the assembly algorithms? 2) How different algorithms handle local repeats or segmentation duplicates in the genome? 3) How do DBG, OLC, string graph, greedy and hybrid algorithms perform with different sequencing read length? ...
olc assembly ngs dbg illumina written 16 months ago by Abdul Rafay Khan910

Latest awards to Abdul Rafay Khan

Great Question 8 months ago, created a question with more than 5,000 views. For Run BLAST on Linux terminal
Epic Question 8 months ago, created a question with more than 10,000 views. For Install and Run R on Linux
Popular Question 8 months ago, created a question with more than 1,000 views. For Run BLAST on Linux terminal
Popular Question 8 months ago, created a question with more than 1,000 views. For Best tool for Quality Assessment for Next Generation Sequencing Data?
Popular Question 8 months ago, created a question with more than 1,000 views. For What is N50 in de novo genome assembler "Velvet"? and why we calculate it?
Popular Question 8 months ago, created a question with more than 1,000 views. For Best Variation Analysis Software which can support VCF file Format?
Popular Question 8 months ago, created a question with more than 1,000 views. For Unix or Linux which is better choice for genomic analysis?
Popular Question 8 months ago, created a question with more than 1,000 views. For Bowtie2 vs Tophat Whats the difference
Student 8 months ago, asked a question with at least 3 up-votes. For Why not Windows
Scholar 8 months ago, created an answer that has been accepted. For A: MaSuRCA Assembler runCA Error
Supporter 8 months ago, voted at least 25 times.
Great Question 10 months ago, created a question with more than 5,000 views. For Run BLAST on Linux terminal
Popular Question 10 months ago, created a question with more than 1,000 views. For Run BLAST on Linux terminal
Appreciated 11 months ago, created a post with more than 5 votes. For Tools to merge overlapping paired-end reads
Great Question 11 months ago, created a question with more than 5,000 views. For Run BLAST on Linux terminal
Great Question 12 months ago, created a question with more than 5,000 views. For Run BLAST on Linux terminal
Great Question 16 months ago, created a question with more than 5,000 views. For Run BLAST on Linux terminal
Epic Question 22 months ago, created a question with more than 10,000 views. For Install and Run R on Linux
Popular Question 22 months ago, created a question with more than 1,000 views. For Run BLAST on Linux terminal
Popular Question 22 months ago, created a question with more than 1,000 views. For Best tool for Quality Assessment for Next Generation Sequencing Data?
Student 22 months ago, asked a question with at least 3 up-votes. For Why not Windows
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Gene list for an organism
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: What are chimeric reads?
Student 2.1 years ago, asked a question with at least 3 up-votes. For .seq and .reads format?

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