User: Abdul Rafay Khan
Abdul Rafay Khan • 910
- Reputation:
- 910
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- Location:
- Karachi, PK
- Last seen:
- 3 weeks, 1 day ago
- Joined:
- 4 years, 4 months ago
- Email:
- a**********@gmail.com
Contact: alrafaykhan@gmail.com
Posts by Abdul Rafay Khan
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... I am trying to compile gerp++ source code on Ubuntu 18.04.1 LTS but i am getting error using make command.
sudo make
g++ -Wall -W -pedantic -O4 -c MIter.cc
g++ -Wall -W -pedantic -O4 -c Mseq.cc
Mseq.cc: In member function ‘Vec Mseq::getAlignment(Seq::size_type, Seq::size_type) const ...
written 22 days ago by
Abdul Rafay Khan • 910
• updated
15 days ago by
Biostar ♦♦ 20
0
votes
1
answer
260
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1
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Comment:
C: GATK gradlew bundle Error
... Thank you dariober, it works
sudo apt-get update
sudo apt-get install openjdk-8-jdk
sudo update-alternatives --config java
sudo update-alternatives --config javac
and enter the number for which JDK to use of your choice. ...
written 10 months ago by
Abdul Rafay Khan • 910
1
vote
1
answer
260
views
1
answer
... While building gatk
sudo ./gradlew bundle
> Downloading
> https://services.gradle.org/distributions/gradle-3.1-bin.zip
>
> Exception in thread "main" javax.net.ssl.SSLException:
> java.security.ProviderException: java.security.InvalidKeyException: EC
> parameters error at
& ...
written 10 months ago by
Abdul Rafay Khan • 910
• updated
10 months ago by
dariober ♦ 9.9k
0
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0
answers
287
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0
answers
... Issue while Building GATK4
sudo ./gradlew bundle
Starting a Gradle Daemon, 1 incompatible and 1 stopped Daemons could not be reused, use --status for details
FAILURE: Build failed with an exception.
Where:
Build file '/home/rafay/gatk-4.0.2.0/build.gradle' line: 289
What went wrong:
A problem oc ...
written 11 months ago by
Abdul Rafay Khan • 910
2
votes
0
answers
1.3k
views
0
answers
... Looking for a book which covers all aspect of Next-Generation Sequencing Data Analysis and can be add in academic course for students. ...
written 11 months ago by
Abdul Rafay Khan • 910
• updated
11 weeks ago by
h.mon ♦ 23k
3
votes
1
answer
779
views
1
answer
... I want to align my uBAM files using bwa mem.
Does BWA mem works with uBAM files?
...
written 12 months ago by
Abdul Rafay Khan • 910
1
vote
1
answer
290
views
1
answer
... Is there any way to calculate the mean coverage of each amplicon in a whole run (in 16 or 32 samples)? ...
written 12 months ago by
Abdul Rafay Khan • 910
• updated
12 months ago by
vmicrobio • 240
4
votes
2
answers
419
views
5 follow
2
answers
... > File "dna2prot2-working-test-Copy.py", line 29, in print
> (entry.seq).translate()#This will translate nucleotide sequence to
> amino acid sequence AttributeError: 'NoneType' object has no attribute
> 'translate'
Code:
import sys
from Bio import SeqIO
f ...
written 13 months ago by
Abdul Rafay Khan • 910
• updated
13 months ago by
Selenocysteine • 530
1
vote
0
answers
315
views
0
answers
... Why do we required de novo sequencing if almost all the organisms are being sequenced? Why Don't we only focus on reference based sequencing? ...
written 15 months ago by
Abdul Rafay Khan • 910
1
vote
0
answers
430
views
0
answers
... 1) What is the overarching challenges in the assembly algorithms?
2) How different algorithms handle local repeats or segmentation duplicates in the genome?
3) How do DBG, OLC, string graph, greedy and hybrid algorithms perform with different sequencing read length? ...
written 16 months ago by
Abdul Rafay Khan • 910
Latest awards to Abdul Rafay Khan
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created a question with more than 5,000 views.
For Run BLAST on Linux terminal
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For Install and Run R on Linux
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For Best tool for Quality Assessment for Next Generation Sequencing Data?
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For What is N50 in de novo genome assembler "Velvet"? and why we calculate it?
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For What does Read Depth mean in Torrent Browser Analysis Report? Why it is shown as blank after complete sequencing?
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For Best Variation Analysis Software which can support VCF file Format?
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For Unix or Linux which is better choice for genomic analysis?
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For Bowtie2 vs Tophat Whats the difference
Scholar
8 months ago,
created an answer that has been accepted.
For A: MaSuRCA Assembler runCA Error
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For Run BLAST on Linux terminal
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Appreciated
11 months ago,
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For Tools to merge overlapping paired-end reads
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For Run BLAST on Linux terminal
Great Question
12 months ago,
created a question with more than 5,000 views.
For Run BLAST on Linux terminal
Great Question
16 months ago,
created a question with more than 5,000 views.
For Run BLAST on Linux terminal
Epic Question
22 months ago,
created a question with more than 10,000 views.
For Install and Run R on Linux
Popular Question
22 months ago,
created a question with more than 1,000 views.
For Run BLAST on Linux terminal
Popular Question
22 months ago,
created a question with more than 1,000 views.
For Best tool for Quality Assessment for Next Generation Sequencing Data?
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