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1
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4
replies
1.6k
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6 follow
De novo sequencing?
De-novo-sequencing
updated 12 months ago by 45k • written 7.8 years ago by ★ 1.2k
46
votes
9
replies
49k
views
7 follow
Tool: Tools to merge overlapping paired-end reads
ngs Assembly fastq
updated 2.4 years ago by ▴ 70 • written 8.8 years ago by ★ 1.2k
0
votes
1
reply
841
views
Extract all snps of particular gene/genes from dbSNP using linux ?
snps
updated 3.7 years ago by 21k • written 3.7 years ago by ★ 1.2k
0
votes
3
replies
2.5k
views
Gerp++ installation error
gerp gerp++ SNP gerp2
updated 4.3 years ago by • 0 • written 6.7 years ago by ★ 1.2k
23
votes
6
replies
16k
views
7 follow
Bioinformatics Journal with no publishing fees?
Journal
updated 2.5 years ago by 45k • written 10.9 years ago by ★ 1.2k
3
votes
2
replies
3.2k
views
Exome versus RNA sequencing
RNA-Seq ChIP-Seq Assembly
updated 5.6 years ago by 20 • written 8.8 years ago by ★ 1.2k
1
vote
0
replies
4.8k
views
Answer: A: Alternative to blast, faster but less sensitive?
updated 5.7 years ago by 45k • written 10.0 years ago by ★ 1.2k
1
vote
5
replies
5.0k
views
How to calculate the coverage in targeted sequencing?
SNP Targeted Sequencing NGS Coverage
updated 5.8 years ago by ★ 2.2k • written 8.0 years ago by ★ 1.2k
1
vote
0
replies
8.1k
views
Answer: A: What Are The Best Solutions For 2D Generation Of Small Molecules ?
updated 5.9 years ago by 45k • written 10.9 years ago by ★ 1.2k
2
votes
1
reply
1.5k
views
Add sample number/name column to VEP result
vep vcf
updated 6.0 years ago by 24k • written 6.0 years ago by ★ 1.2k
3
votes
2
replies
6.7k
views
Forum: Best book for learning Next-Generation Sequencing Data Analysis?
ngs
updated 2.3 years ago by 45k • written 7.6 years ago by ★ 1.2k
1
vote
1
reply
1.4k
views
Multi samples VCF file manipulation
vcf
6.0 years ago by Abdul Rafay Khan ★ 1.2k
0
votes
0
replies
1.6k
views
Comment: C: LOD Score NaN Error
6.3 years ago by Abdul Rafay Khan ★ 1.2k
1
vote
4
replies
1.7k
views
How to perform fst test using SNPs frequency?
SNP fst
6.4 years ago by Abdul Rafay Khan ★ 1.2k
2
votes
2
replies
1.6k
views
LOD Score NaN Error
lod score R paramlink
updated 6.4 years ago by 12k • written 6.4 years ago by ★ 1.2k
0
votes
1
reply
65k
views
Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
6.4 years ago by Abdul Rafay Khan ★ 1.2k
0
votes
2
replies
1.1k
views
How to convert population SNPs frequency data into Plink format?
Plink SNP
6.4 years ago by Abdul Rafay Khan ★ 1.2k
0
votes
0
replies
1.3k
views
How do I calculate the haplotype frequencies in 1000 genome populations
haplotype 1000 genome populations frequencies
6.4 years ago by Abdul Rafay Khan ★ 1.2k
2
votes
1
reply
2.1k
views
Principal components analysis of SNP data
pca SNP Principal components
6.4 years ago by Abdul Rafay Khan ★ 1.2k
2
votes
1
reply
3.0k
views
Comment: C: Calculate the allele frequency of specific sub-population using VEP
6.4 years ago by Abdul Rafay Khan ★ 1.2k
5
votes
4
replies
3.0k
views
Calculate the allele frequency of specific sub-population using VEP
vep allele frequency
updated 4.5 years ago by 24k • written 6.4 years ago by ★ 1.2k
2
votes
1
reply
1.5k
views
Comment: C: List of genes TO starting and ending bps USING biomaRt R
6.4 years ago by Abdul Rafay Khan ★ 1.2k
8
votes
3
replies
1.5k
views
List of genes TO starting and ending bps USING biomaRt R
biomaRt R
6.4 years ago by Abdul Rafay Khan ★ 1.2k
3
votes
12
replies
3.7k
views
Assemblathon Perl script Error
Assembly genome
updated 7.4 years ago by • 0 • written 8.8 years ago by ★ 1.2k
0
votes
0
replies
1.9k
views
Comment: C: GATK gradlew bundle Error
7.4 years ago by Abdul Rafay Khan ★ 1.2k
1
vote
2
replies
1.9k
views
GATK gradlew bundle Error
software error gatk
updated 7.4 years ago by 15k • written 7.4 years ago by ★ 1.2k
0
votes
1
reply
1.9k
views
GATK (Cannot find '.git' directory)
gatk
7.6 years ago by Abdul Rafay Khan ★ 1.2k
3
votes
1
reply
4.1k
views
Does BWA mem work with uBAM file?
uBAM bwa bwa mem align
7.6 years ago by Abdul Rafay Khan ★ 1.2k
1
vote
1
reply
1.6k
views
Mean coverage in Ion Torrent PGM
Ion Torrent ngs coverage
updated 7.6 years ago by ▴ 290 • written 7.6 years ago by ★ 1.2k
21
votes
6
replies
20k
views
FastQC Error Problem
FastQC Ubuntu
updated 2.8 years ago by 35k • written 10.0 years ago by ★ 1.2k
4
votes
5
replies
2.2k
views
Python script error
python biopython
updated 7.7 years ago by ▴ 620 • written 7.7 years ago by ★ 1.2k
1
vote
2
replies
1.4k
views
Questions related assembly algorithms?
assembly DBG OLC ngs illumina
8.0 years ago by Abdul Rafay Khan ★ 1.2k
0
votes
2
replies
2.6k
views
ABySS and Velvet "number of contigs and contig length in pair-end and single-end datasets"
ABySS Velvet ngs illumina
8.0 years ago by Abdul Rafay Khan ★ 1.2k
13
votes
6
replies
4.3k
views
7 follow
Unix or Linux which is better choice for genomic analysis?
analysis linux unix next-gen genomic
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.2k
0
votes
1
reply
1.9k
views
Velvet and ABySS (de Bruijn graph Assemblers)
de novo ngs Assembly
updated 8.5 years ago by ★ 2.1k • written 8.5 years ago by ★ 1.2k
0
votes
1
reply
1.7k
views
Ray vs other de novo assembler
Assembly illumina ngs de novo
8.6 years ago by Abdul Rafay Khan ★ 1.2k
1
vote
0
replies
2.8k
views
Genome fraction / Genome coverage
ngs de novo
8.6 years ago by Abdul Rafay Khan ★ 1.2k
0
votes
1
reply
2.4k
views
Comment: C: Edena Assembler error
8.7 years ago by Abdul Rafay Khan ★ 1.2k
2
votes
3
replies
2.4k
views
Edena Assembler error
ngs denovo
8.7 years ago by Abdul Rafay Khan ★ 1.2k
0
votes
0
replies
2.1k
views
Answer: A: what are the sources to analyze and visualize annotated fasta reads ?
8.7 years ago by Abdul Rafay Khan ★ 1.2k
0
votes
1
reply
1.8k
views
Comment: C: .seq and .reads format?
8.7 years ago by Abdul Rafay Khan ★ 1.2k
1
vote
1
reply
2.1k
views
Comment: C: what are the sources to analyze and visualize annotated fasta reads ?
8.7 years ago by Abdul Rafay Khan ★ 1.2k
1
vote
0
replies
2.5k
views
Answer: A: Convert VCF to MAF from RNASeq mutation analysis
8.7 years ago by Abdul Rafay Khan ★ 1.2k
1
vote
1
reply
2.9k
views
Answer: A: Ensembl 86 annotations with SnpEff for GRCh37
8.7 years ago by Abdul Rafay Khan ★ 1.2k
2
votes
0
replies
1.8k
views
Answer: A: Where I find plant example (small) dataset from Illumina Hiseq 2000 sequencing
8.7 years ago by Abdul Rafay Khan ★ 1.2k
5
votes
3
replies
1.8k
views
.seq and .reads format?
ngs
updated 8.7 years ago by 20 • written 8.8 years ago by ★ 1.2k
4
votes
2
replies
5.4k
views
Convert paired end fastq file to fasta format
fastq fasta ngs
8.8 years ago by Abdul Rafay Khan ★ 1.2k
2
votes
0
replies
3.0k
views
Answer: A: MaSuRCA Assembler runCA Error
8.8 years ago by Abdul Rafay Khan ★ 1.2k
3
votes
1
reply
3.0k
views
MaSuRCA Assembler runCA Error
Assembly MaSuRCA NGS
8.8 years ago by Abdul Rafay Khan ★ 1.2k
1
vote
0
replies
3.3k
views
Comment: C: OLC based assemblers
8.8 years ago by Abdul Rafay Khan ★ 1.2k
79 results • Page 1 of 2
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