MaSuRCA Assembler runCA Error
1
1
Entering edit mode
4.9 years ago

Successfuly install MaSuRCA

tar xfz MaSuRCA-3.2.1.tar.gz

cd MaSuRCA-3.2.1

sudo ./install.sh

Configure and run config.txt

MaSuRCA-3.2.1/bin/masurca MaSuRCA-3.2.1/bin/config.txt

Verifying PATHS...
jellyfish OK
Error: runCA not found or failed to run

Help me to get through this error.

Assembly MaSuRCA NGS • 2.0k views
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2
Entering edit mode
4.8 years ago

Solved:

PATH=~/tools/MaSuRCA-3.2.1_12062016/CA/Linux-i686/bin:$PATH

PATH=$PATH: ~/tools/MaSuRCA-3.2.1_12062016/CA/Linux-i686/bin

sudo env "PATH=$PATH" ~/tools/MaSuRCA-3.2.1_12062016/bin/masurca ~/tools/MaSuRCA-3.2.1_12062016/bin/config.txt

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