Multi samples VCF file manipulation
0
0
Entering edit mode
4.6 years ago

I have VCF file with multiple samples. How to list down the SNP present in more than one sample with sample ids.
vcf • 1.2k views
ADD COMMENT •
1
Entering edit mode

merge the vcf using , for example, 'bcftools merge'. Then filter using, for example, 'gatk SelectVariant' , or 'bcftools view -i'

ADD REPLY •

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 2987 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6