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User: Dataminer

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Dataminer • 2.5k
Reputation:
2,550
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Trusted
Location:
Netherlands
Last seen:
2 weeks, 4 days ago
Joined:
7 years, 8 months ago
Email:
a**************@gmail.com

Posts by Dataminer

<prev • 310 results • page 1 of 31 • next >
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Comment: C: BigWig from ensembl assembly to UCSC session
... Hey Devon, Thank you for your message. I have taken this file from `GRCh37_ensembl2UCSC.tx`t the link. I am doing this in terminal `python convertBigWigChroms.py GRCh37_ensembl2UCSC.txt Sort.Ref.ER.DSG.bam.bw ER.DSG.bw` and I get this error: Traceback (most recent call last): File "con ...
written 4 months ago by Dataminer • 2.5k
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Comment: C: BigWig from ensembl assembly to UCSC session
... I can try but not sure if these guys will accept it. ...
written 4 months ago by Dataminer • 2.5k
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Comment: C: BigWig from ensembl assembly to UCSC session
... Could you suggest something. I don't want to realign as it will cost a lot of time and the other option is to generate wiggle track (add chr)and convert them into bigwigs. But is it possible to add "chr" to the existing bigwigs and make them work? ...
written 4 months ago by Dataminer • 2.5k
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Comment: C: BigWig from ensembl assembly to UCSC session
... I know how to fix this in wiggle files but I have no clue how to fix this in bigwigs. ...
written 4 months ago by Dataminer • 2.5k
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Comment: C: BigWig from ensembl assembly to UCSC session
... Reviewer wants UCSC session and I don't want to realign the data. ...
written 4 months ago by Dataminer • 2.5k
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BigWig from ensembl assembly to UCSC session
... Dear Community, I am having trouble in viewing my data in UCSC and I am not sure what is going wrong. Situation#: I have my bam files aligned using ensembl assembly and then preprocessed and generated bigwigs (deep tools) and then uploaded at UCSC (no errors). But as soon as I visualise the track ...
ensembl bigwig ucsc written 4 months ago by Dataminer • 2.5k • updated 4 months ago by Devon Ryan ♦ 86k
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Comment: C: heat map and Survival plot
... Thank's a lot. Very helpful. ...
written 5 months ago by Dataminer • 2.5k
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Comment: C: heat map and Survival plot
... These are all female samples and I don't have the normals. What I can think of that the median expression can be made used in deceased and living(may be). ...
written 5 months ago by Dataminer • 2.5k
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Comment: C: heat map and Survival plot
... This is all I have got. May be OS can be used, I am very new to this kind of analysis. ...
written 5 months ago by Dataminer • 2.5k
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heat map and Survival plot
... Dear Community, I am struggling with a problem: I have RNAseq data from 24 samples and for these I have the survival data as well. What I want his to figure out the most interesting genes based upon Survival analyses and clustering. The sample data that I have is RNAseq (read counts): ...
k-m plot R rna-seq survival-plot written 5 months ago by Dataminer • 2.5k • updated 5 months ago by Kevin Blighe ♦ 32k

Latest awards to Dataminer

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Great Question 4 months ago, created a question with more than 5,000 views. For Nobel Prize And Bioinformatics
Popular Question 8 months ago, created a question with more than 1,000 views. For Tools to identify biologically relevant SNP calls from a vcf file
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Great Question 8 months ago, created a question with more than 5,000 views. For Chip Seq Data Analysis
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Popular Question 8 months ago, created a question with more than 1,000 views. For Tools to identify biologically relevant SNP calls from a vcf file
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Good Question 16 months ago, asked a question that was upvoted at least 5 times. For Extracting List Of Genes Associated With A Pathway In Kegg
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Great Question 16 months ago, created a question with more than 5,000 views. For Nobel Prize And Bioinformatics
Popular Question 16 months ago, created a question with more than 1,000 views. For Extracting List Of Genes Associated With A Pathway In Kegg
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