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0
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0
replies
437
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Compute percentage normalization of gene expression in diseased samples vs healthy controls
statistics RNA-seq DESeq2
16 months ago by Dataminer ★ 2.8k
39
votes
11
replies
19k
views
11 follow
Best Database Of Transcription Factor Binding Sites
transcription binding database
updated 2.8 years ago by • 0 • written 14.6 years ago by ★ 2.8k
1
vote
2
replies
2.5k
views
SmartSeq2 with STARsolo gives only one cell
scRNA-seq SmartSeq STARsolo
updated 3.5 years ago by 89k • written 3.7 years ago by ★ 2.8k
1
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1
reply
2.0k
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Comment: Comment: Free lancer or Contractor for scRNA seq data analysis pipeline
3.7 years ago by Dataminer ★ 2.8k
4
votes
2
replies
2.0k
views
Job: Free lancer or Contractor for scRNA seq data analysis pipeline
scRNA-seq
updated 3.7 years ago by 21k • written 3.7 years ago by ★ 2.8k
0
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1
reply
4.2k
views
Comment: Comment: Creating reference genome for mapping and then selecting
4.6 years ago by Dataminer ★ 2.8k
0
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0
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4.2k
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Comment: Comment: Creating reference genome for mapping and then selecting
4.6 years ago by Dataminer ★ 2.8k
4
votes
6
replies
4.2k
views
Creating reference genome for mapping and then selecting
mm10 hg38 STAR RNA-seq
updated 4.6 years ago by 103k • written 4.6 years ago by ★ 2.8k
1
vote
1
reply
1.1k
views
bwa mem piped to samtools is not working strange error
samtools bwa mem
4.7 years ago by Dataminer ★ 2.8k
0
votes
3
replies
4.0k
views
Shiny board with seurat object
Seurat Shiny
updated 4.8 years ago by ▴ 390 • written 4.9 years ago by ★ 2.8k
2
votes
1
reply
1.5k
views
to consider only intronic reads in cell ranger pipeline
cell ranger snRNA
updated 4.9 years ago by 13k • written 4.9 years ago by ★ 2.8k
0
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0
replies
4.0k
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Comment: C: Shiny board with seurat object
4.9 years ago by Dataminer ★ 2.8k
2
votes
1
reply
2.7k
views
How to tackle low reads in RNA-Seq data and compute differential expression
RNA-Seq RSEM STAR
updated 5.2 years ago by 20 • written 9.4 years ago by ★ 2.8k
7
votes
4
replies
2.5k
views
Mismatch in probe ids
Affymetrix Microarray
updated 5.4 years ago by 89k • written 5.4 years ago by ★ 2.8k
18
votes
8
replies
4.3k
views
Open Question For Bioinformaticians .... Need Some Ideas
chip-seq
updated 5.4 years ago by 20 • written 13.2 years ago by ★ 2.8k
0
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0
replies
2.3k
views
Comment: C: Processing bulk RNA-seq TMM matrix to get DEGs
5.6 years ago by Dataminer ★ 2.8k
3
votes
6
replies
2.3k
views
Processing bulk RNA-seq TMM matrix to get DEGs
RNA-Seq
updated 5.6 years ago by 89k • written 5.6 years ago by ★ 2.8k
0
votes
1
reply
3.4k
views
Comment: C: Snps In Protein Domains
updated 5.9 years ago by 45k • written 11.1 years ago by ★ 2.8k
0
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1
reply
5.6k
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Comment: C: Heatmap to identify differential regions between 2 groups
updated 5.9 years ago by 45k • written 9.8 years ago by ★ 2.8k
1
vote
0
replies
3.4k
views
Comment: C: Identification Of Genomic Regions Where Multiple Tf Binds.
updated 5.9 years ago by 45k • written 13.8 years ago by ★ 2.8k
1
vote
0
replies
7.6k
views
Comment: C: Find (Start:End) Positions That Sublists Occur Within A List . Python
updated 5.9 years ago by 45k • written 13.9 years ago by ★ 2.8k
39
votes
22
replies
32k
views
12 follow
Sift Or Polyphen
snp non mutation
updated 5.9 years ago by ★ 1.2k • written 14.6 years ago by ★ 2.8k
3
votes
1
reply
3.2k
views
Linking SNPs to DNA methylation calls
DNA-methylation SNP
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 2.8k
3
votes
0
replies
8.0k
views
Answer: A: How To Identify Isoforms Using Rna-Seq Data And How To Integrate Tf Binding With
updated 6.1 years ago by 45k • written 14.2 years ago by ★ 2.8k
0
votes
0
replies
11k
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Comment: C: Peaks And Nearby Genes
updated 6.1 years ago by 45k • written 14.4 years ago by ★ 2.8k
1
vote
0
replies
14k
views
Comment: C: Nobel Prize And Bioinformatics
updated 6.1 years ago by 45k • written 14.6 years ago by ★ 2.8k
2
votes
3
replies
9.6k
views
Answer: A: Predicting Effect Of Single Mutation On Protein Structure
updated 6.1 years ago by 45k • written 14.6 years ago by ★ 2.8k
0
votes
0
replies
22k
views
Comment: C: How Do You Calculate If Two Sets Of Genomic Regions Overlap Significantly?
updated 6.1 years ago by 45k • written 14.2 years ago by ★ 2.8k
9
votes
17
replies
8.0k
views
Paired end peak callers
ChIP-Seq
updated 6.3 years ago by ▴ 50 • written 6.7 years ago by ★ 2.8k
7
votes
5
replies
4.4k
views
(Online) Courses In System Biology
written 12.6 years ago by ★ 2.8k
2
votes
3
replies
4.9k
views
Overlapping Peaks And Distance Between Them....
chip-seq
updated 6.4 years ago by 20 • written 14.4 years ago by ★ 2.8k
32
votes
19
replies
17k
views
8 follow
Statistical Measure Of Biological Significance For Overlapping Genomic Regions
statistics overlap
updated 2.8 years ago by 45k • written 14.4 years ago by ★ 2.8k
1
vote
1
reply
1.8k
views
Your favourite workflow for Hi-C data analysis (Plant Genome)
Hi-C
updated 6.5 years ago by 20 • written 6.6 years ago by ★ 2.8k
0
votes
1
reply
8.0k
views
Comment: C: Paired end peak callers
6.7 years ago by Dataminer ★ 2.8k
1
vote
1
reply
4.0k
views
Comment: C: Hi-C data alignment with star
6.8 years ago by Dataminer ★ 2.8k
5
votes
9
replies
4.0k
views
Hi-C data alignment with star
star hi-c
updated 6.8 years ago by ▴ 370 • written 6.8 years ago by ★ 2.8k
0
votes
1
reply
4.0k
views
Comment: C: Hi-C data alignment with star
6.8 years ago by Dataminer ★ 2.8k
0
votes
0
replies
4.0k
views
Comment: C: Hi-C data alignment with star
6.8 years ago by Dataminer ★ 2.8k
0
votes
0
replies
3.2k
views
creating loom files using loomR
loomR RNA-seq
6.9 years ago by Dataminer ★ 2.8k
-1
votes
18
replies
13k
views
Effective Genome Size In Macs [Hg19]
macs genomics
updated 7.2 years ago by ▴ 90 • written 13.0 years ago by ★ 2.8k
0
votes
1
reply
6.1k
views
Comment: C: BigWig from ensembl assembly to UCSC session
7.4 years ago by Dataminer ★ 2.8k
6
votes
16
replies
6.1k
views
BigWig from ensembl assembly to UCSC session
Bigwig UCSC ENSEMBL
updated 7.4 years ago by 105k • written 7.4 years ago by ★ 2.8k
0
votes
0
replies
6.1k
views
Comment: C: BigWig from ensembl assembly to UCSC session
7.4 years ago by Dataminer ★ 2.8k
0
votes
0
replies
6.1k
views
Comment: C: BigWig from ensembl assembly to UCSC session
7.4 years ago by Dataminer ★ 2.8k
1
vote
1
reply
6.1k
views
Comment: C: BigWig from ensembl assembly to UCSC session
7.4 years ago by Dataminer ★ 2.8k
0
votes
1
reply
6.1k
views
Comment: C: BigWig from ensembl assembly to UCSC session
7.4 years ago by Dataminer ★ 2.8k
3
votes
2
replies
2.9k
views
Creatig TrackHubs from BigWigs
trackHubs genome
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 2.8k
1
vote
0
replies
3.5k
views
Comment: C: heat map and Survival plot
7.4 years ago by Dataminer ★ 2.8k
5
votes
6
replies
3.5k
views
heat map and Survival plot
RNA-Seq Survival-plot K-M plot R
updated 7.4 years ago by 89k • written 7.4 years ago by ★ 2.8k
0
votes
0
replies
3.5k
views
Comment: C: heat map and Survival plot
7.4 years ago by Dataminer ★ 2.8k
319 results • Page 1 of 7
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