User: lessismore

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lessismore440
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Mexico
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Posts by lessismore

<prev • 135 results • page 1 of 14 • next >
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Comment: C: Is it possible to recreate clusterProfiler plots using my own pathway data?
... Hi, Could you tell me how you did it? ...
written 2 days ago by lessismore440
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Comment: C: Ideas to plot several enrichment results (BP) in one
... muchisimas gracias tio! :) you're my idol i guess ...
written 4 days ago by lessismore440
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Display common genes in sets by a binary matrix
... hey all, i have say 5 set of genes (each set with genes separated by \n) what i want is to create a binary matrix to display for each gene its presence (with 1) or absence (with 0) in each set. Do you have any advice to do it with R? my final purpose is to submit this matrix to upsetR. thanks in a ...
R matrix written 5 days ago by lessismore440 • updated 5 days ago by russhh2.9k
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Comment: C: technical problem with R and GO terms
... thanks a lot for your answer! do you think is possible to embed these 3 operations in a function and apply this function to a list of n dataframes? ...
written 5 days ago by lessismore440
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Comment: C: Ideas to plot several enrichment results (BP) in one
... Hi Kevin, it looks very nice, thanks i would i appreciat! ...
written 5 days ago by lessismore440
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technical problem with R and GO terms
... Hey all, i have a technical problem. i have a 2 column table with a list of GO and respective p-value in R. Now i want to add another column based on a specific pattern in the GO term. e.g. if the GO term starts with GO:002* (for capturing e.g. GO:002545545,GO:002434343, GO:00254457,etc..) i want to ...
R go written 5 days ago by lessismore440 • updated 5 days ago by ATPoint3.0k
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Ideas to plot several enrichment results (BP) in one
... Hey all, searching for ideas and advices. i have 4 of enrichment results for biological processes. They should be relatively different from each other but i expect a certain number of categories to overlap between each other. My idea was indeed plotting all results in a comprehensive way, in order ...
enrichment plots biological process written 6 days ago by lessismore440 • updated 5 days ago by dariober8.6k
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Answer: A: Building a Network from gene expression data
... There could be quite a lot of answers. Of course it depends by your biological questions. https://www.biostars.org/p/96826/ https://www.biostars.org/p/117640/ https://www.biostars.org/p/112103/ https://www.biostars.org/p/151921/ i found this review quite complete https://www.ncbi.nlm.nih.gov/pubmed ...
written 11 days ago by lessismore440
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GO annotation filtering for BP
... Dear all, i think its a noob question. Have downloaded a GO file annotation. with 1st column: name of the genome version, 2nd column: gene ID, 3rd column: GO term. What i need is to filter these genes/GO for the ones belonging only to Biological Process. Could you tell me how to do that? i was sea ...
go filtering functional annotation written 22 days ago by lessismore440 • updated 22 days ago by lieven.sterck540
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Formatting problem gene table conversion
... Hey all, a question about a problem in formatting. I have this table, i would like to filter it based on the genes that have matches (if they have, the matches are present in the lines below them until the next gene). >gene1 match1 match2 match3 >gene2 >gene3 ...
python awk bash written 4 weeks ago by lessismore440 • updated 4 weeks ago by ReWeeda30

Latest awards to lessismore

Appreciated 11 days ago, created a post with more than 5 votes. For A: Building a Network from gene expression data
Good Answer 11 days ago, created an answer that was upvoted at least 5 times. For A: Building a Network from gene expression data
Teacher 11 days ago, created an answer with at least 3 up-votes. For A: How to analyze affy U133A micro-array data
Popular Question 4 weeks ago, created a question with more than 1,000 views. For Server not found, Firefox can't find the server www.ncbi.nlm.nih.gov.
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Server not found, Firefox can't find the server www.ncbi.nlm.nih.gov.
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: compare two text file
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Centurion 4 months ago, created 100 posts.
Scholar 5 months ago, created an answer that has been accepted. For A: Makeblastdb error: file does not match input format type, default input type is
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: How to analyze affy U133A micro-array data
Scholar 5 months ago, created an answer that has been accepted. For A: Makeblastdb error: file does not match input format type, default input type is
Popular Question 21 months ago, created a question with more than 1,000 views. For Server not found, Firefox can't find the server www.ncbi.nlm.nih.gov.
Scholar 22 months ago, created an answer that has been accepted. For A: Makeblastdb error: file does not match input format type, default input type is
Popular Question 3.2 years ago, created a question with more than 1,000 views. For How to convert Mauve (xmfa) in Mega, multifasta, phylip or nexus?

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