User: lessismore

gravatar for lessismore
lessismore170
Reputation:
170
Status:
Trusted
Location:
Mexico
Last seen:
5 hours ago
Joined:
2 years, 10 months ago
Email:
f********@hotmail.com

Posts by lessismore

<prev • 69 results • page 1 of 7 • next >
0
votes
0
answers
112
views
0
answers
Motifs & domains comparisons between proteins
... Hello everybody, who can suggest a good tool for aligning and highlighting the small differences between closely related proteins, in terms of motifs (or domains) potential dissimilarities and make nice visualization (and following deductions) out of that?? thanks in advance ...
0
votes
1
answer
193
views
1
answers
Comment: C: Microarray data analysis - pipeline (problem with custom CDF)
... That one was the code i initially used because i had not a custom cdf, then i found it. So my pipeline was: # load the cdf package in your R environment # make sure you set your working directory where you have all CEL files library (Affy) # In my case i have the custom C ...
written 14 days ago by lessismore170
1
vote
1
answer
151
views
1
answers
Answer: A: nr- protein database
... It's here : ftp://ftp.ncbi.nlm.nih.gov/refseq/release/plant/ ...
written 14 days ago by lessismore170
0
votes
1
answer
193
views
1
answers
Comment: C: Microarray data analysis - pipeline (problem with custom CDF)
... try to export and reimport it. ...
written 15 days ago by lessismore170
3
votes
1
answer
109
views
1
answers
Answer: A: How to analyze affy U133A micro-array data
... have you checked this? https://www.biostars.org/p/53870/ & http://jura.wi.mit.edu/bio/education/bioinfo2007/arrays/array_exercises_1R.html ...
written 15 days ago by lessismore170
0
votes
1
answer
131
views
1
answers
Comment: C: SVA analysis output R
... Seems fine, recently they developed batchQC library, here is an example. nbatch <- 3 ncond <- 2 npercond <- 10 data.matrix <- rnaseq_sim(ngenes=50, nbatch=nbatch, ncond=ncond, npercond= npercond, basemean=10000, ggstep=50, bbstep=2000, ccstep=800, basedisp=100, b ...
written 16 days ago by lessismore170
0
votes
1
answer
131
views
1
answers
Answer: A: SVA analysis output R
... Hey, Can you supply the entire code you used for this unsupervised batch effect correction? ...
written 16 days ago by lessismore170
0
votes
0
answers
138
views
0
answers
Comment: C: Clustal omega interpretation
... There is a paper on that http://europepmc.org/abstract/MED/21988835 ...
written 17 days ago by lessismore170
0
votes
2
answers
139
views
2
answers
Answer: A: RNASeq data normalisation affected by genes with large number of read counts
... If the genes are completely distorting your analyses i suggest to remove them from the gtf of your reference genome, remapping your reads, and see how this modification could improve your analysis. ...
written 17 days ago by lessismore170
0
votes
2
answers
129
views
2
answers
Answer: A: Batch Download Enzymes by EC Number
... I think you may find useful infos here https://www.biostars.org/p/116627/ ...
written 17 days ago by lessismore170

Latest awards to lessismore

Teacher 15 days ago, created an answer with at least 3 up-votes. For A: How to analyze affy U133A micro-array data
Popular Question 16 months ago, created a question with more than 1,000 views. For Server not found, Firefox can't find the server www.ncbi.nlm.nih.gov.
Scholar 17 months ago, created an answer that has been accepted. For A: Makeblastdb error: file does not match input format type, default input type is
Popular Question 2.8 years ago, created a question with more than 1,000 views. For How to convert Mauve (xmfa) in Mega, multifasta, phylip or nexus?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1396 users visited in the last hour