User: lessismore

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lessismore930
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Posts by lessismore

<prev • 238 results • page 1 of 24 • next >
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Comment: C: Revive old microarray data linking it to new gene annotations
... Thanks, this is actually super useful. ...
written 8 hours ago by lessismore930
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Comment: C: Revive old microarray data linking it to new gene annotations
... Thank you, lll have a look at this. I was referring to GeneChip/DNA Chip ...
written 1 day ago by lessismore930
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Revive old microarray data linking it to new gene annotations
... Dear all, i'm dealing with a plant species with old microarray experiments from before 2010. As i want to integrate this data with new data corresponding to annotations from its brand new genome, what do you recommend to do? A simple best-blast-hit against the new transcript file would do the job? I ...
annotations integration microarray written 1 day ago by lessismore930
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Comment: C: Download entire gene sequences (including UTRs) with BioMart-Ensembl
... I'm looking for the entire gene sequences as for my purpose i want information on UTRs and introns. Thats why i chose that option. ...
written 9 days ago by lessismore930
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Comment: C: Download entire gene sequences (including UTRs) with BioMart-Ensembl
... Thank you. Could you tell if this annotation is normally done by genome paper authors or by the Ensembl staff? I don't think i've ever read, at least in plant papers, about UTR annotation pipeline. ...
written 9 days ago by lessismore930
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Download entire gene sequences (including UTRs) with BioMart-Ensembl
... Dear all, I want to download gene sequences for a list of genes, including UTR annotations. I was for some reason sure that this information was provided for each genome at the moment of release coming from some gene model identification step. I was thus sure to have extracted also the UTR regions ...
ensembl genomes utr written 12 days ago by lessismore930
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Comment: C: Bulk Download all CDS and UTRs of known genes from ENSEMBL
... What if there is no information on a published genome about UTR annotation? For example, i was sure to have extracted also the UTR regions when downloading [`Unspliced (Gene) option in Biomart/Ensembl`] for a list of genes the gene sequences in bulk. It turned out that those sequences were not annot ...
written 12 days ago by lessismore930
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Comment: C: looking for an R package for GO term analysis
... Dear all, any updates on this? Is there any new better option? And what do you recommend for plants? Thanks ...
written 4 weeks ago by lessismore930
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Comment: C: Technical tips to plan a resequencing project
... Dear, thanks for your very informative answer! I forgot to write that a good reference is available. Does your answer change in this case? I've seen that for example, for tea, coffee and sunflower the coverage was between x10 and x20 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6895910/pdf/genes-1 ...
written 12 weeks ago by lessismore930
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Comment: C: Technical tips to plan a resequencing project
... I confirm a good reference is available. Thanks! ...
written 12 weeks ago by lessismore930

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