User: lessismore

gravatar for lessismore
lessismore500
Reputation:
500
Status:
Trusted
Location:
Mexico
Last seen:
11 hours ago
Joined:
3 years, 11 months ago
Email:
f********@hotmail.com

Posts by lessismore

<prev • 176 results • page 1 of 18 • next >
1
vote
0
answers
48
views
0
answers
Integrate several layers of biological information to build a biological network
... Dear all, i am searching for uptodate programs/packages to integrate several data sources (e.g. RNA-Seq, metabolic, protein-protein interaction, etc.) in the same network in order to give a weight to the undirected edges based on the provenience of the gene interaction information. On the other h ...
network analysis data integration written 16 hours ago by lessismore500
0
votes
0
answers
63
views
0
answers
Rice -omics data and annotation resources
... For the rice people. As you already known there is a long list of -omics data and resources mostly in form of databases available online. Unfortunately many of them are outdated/not working/not trustable anymore. I am mainly interested in gene-gene interactions in form of co-expression, metabolic ...
rice omics ppi databases written 29 days ago by lessismore500
0
votes
1
answer
168
views
1
answers
Comment: C: Visualizing model-based clustering with fviz_mclust
... Thanks Kevin. Given your expertise in this could you tell me if you know why some objects of the same cluster are not in the same circle? What does that mean? ive seen that they might have a lower probability to belong to the cluster and that's ok, but why the circle doesnt include them? ...
written 3 months ago by lessismore500
0
votes
1
answer
168
views
1
answers
Comment: C: Visualizing model-based clustering with fviz_mclust
... Thanks kevin, could you please tell me or point me to a link where it's showed how to implement it? ill try to remember it for the rest of my life! ...
written 3 months ago by lessismore500
4
votes
1
answer
168
views
1
answer
Visualizing model-based clustering with fviz_mclust
... Dear all, i have data matrix with samples on rows and genes on columns. i am using `fviz_mclust` function in `factoextra` package as explained here > http://www.sthda.com/english/articles/30-advanced-clustering/104-model-based-clustering-essentials/ When plotting the clusters with this functi ...
factoextra clustering written 3 months ago by lessismore500 • updated 3 months ago by Kevin Blighe30k
0
votes
1
answer
532
views
1
answers
Comment: C: fviz_nbclust (kmeans) with method "gap_stat" error: did not converge in 10 itera
... > dim(df) [1] 2068 25 Im using the default parameters: fviz_nbclust(df, FUNcluster = MyKmeansFUN, method = "gap_stat", diss = NULL, k.max = 10, nboot = 100, verbose = interactive(), barfill = "steelblue", barcolor = "steelblue", linecolor = "steelblue", print.summary ...
written 4 months ago by lessismore500
0
votes
1
answer
532
views
1
answers
Comment: C: fviz_nbclust (kmeans) with method "gap_stat" error: did not converge in 10 itera
... Dear Kevin, thanks a lot for your help. Do you have any idea about what this means? > fviz_nbclust(df, FUNcluster=MyKmeansFUN, method="gap_stat") Clustering k = 1,2,..., K.max (= 10): .. done Bootstrapping, b = 1,2,..., B (= 100) [one "." per sample]: ............... ...
written 4 months ago by lessismore500
2
votes
1
answer
532
views
1
answer
fviz_nbclust (kmeans) with method "gap_stat" error: did not converge in 10 iterations
... Dear all, im trying to find the optimum number of clusters to fit to a gene expression dataset. For this, Im using the packages `FactoMineR` and `factoextra` and the function `fviz_nbclust` on my scaled dataframe (simple dataframe with genes in rows and samples in columns). It scales (z-sc ...
kmeans clustering written 4 months ago by lessismore500 • updated 4 months ago by Kevin Blighe30k
0
votes
0
answers
218
views
0
answers
Comment: C: Deep exploration of an expression atlas
... Thank you very much, ive been looking at genefilter, precisely to this: varFilter(as.matrix(my_expression_data), var.func=IQR, var.cutoff=0.6, filterByQuantile=TRUE) from what ive read, it calculates the interquartile range of each gene, then it sorts the values and it takes the ones above t ...
written 5 months ago by lessismore500
0
votes
0
answers
218
views
0
answers
Comment: C: Deep exploration of an expression atlas
... My aim would be focusing on genes with interesting (preferred) expression changes to be useful for prediction purposes ...
written 5 months ago by lessismore500

Latest awards to lessismore

Popular Question 4 months ago, created a question with more than 1,000 views. For Server not found, Firefox can't find the server www.ncbi.nlm.nih.gov.
Popular Question 4 months ago, created a question with more than 1,000 views. For Server not found, Firefox can't find the server www.ncbi.nlm.nih.gov.
Popular Question 5 months ago, created a question with more than 1,000 views. For Server not found, Firefox can't find the server www.ncbi.nlm.nih.gov.
Popular Question 5 months ago, created a question with more than 1,000 views. For Server not found, Firefox can't find the server www.ncbi.nlm.nih.gov.
Scholar 6 months ago, created an answer that has been accepted. For A: Makeblastdb error: file does not match input format type, default input type is
Appreciated 8 months ago, created a post with more than 5 votes. For A: Building a Network from gene expression data
Good Answer 8 months ago, created an answer that was upvoted at least 5 times. For A: Building a Network from gene expression data
Scholar 8 months ago, created an answer that has been accepted. For A: Makeblastdb error: file does not match input format type, default input type is
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: How to analyze affy U133A micro-array data
Popular Question 9 months ago, created a question with more than 1,000 views. For Server not found, Firefox can't find the server www.ncbi.nlm.nih.gov.
Popular Question 9 months ago, created a question with more than 1,000 views. For Server not found, Firefox can't find the server www.ncbi.nlm.nih.gov.
Commentator 11 months ago, created a comment with at least 3 up-votes. For C: compare two text file
Supporter 11 months ago, voted at least 25 times.
Centurion 12 months ago, created 100 posts.
Scholar 13 months ago, created an answer that has been accepted. For A: Makeblastdb error: file does not match input format type, default input type is
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: How to analyze affy U133A micro-array data
Scholar 13 months ago, created an answer that has been accepted. For A: Makeblastdb error: file does not match input format type, default input type is
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Server not found, Firefox can't find the server www.ncbi.nlm.nih.gov.
Scholar 2.5 years ago, created an answer that has been accepted. For A: Makeblastdb error: file does not match input format type, default input type is
Popular Question 3.9 years ago, created a question with more than 1,000 views. For How to convert Mauve (xmfa) in Mega, multifasta, phylip or nexus?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1233 users visited in the last hour