User: lessismore

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lessismore720
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Posts by lessismore

<prev • 195 results • page 1 of 20 • next >
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Comment: C: devtools Installation error in R (version 3.5.3)?
... Thank you so much! this installation worked for me only when upgrading from 16.10 to 18.04.3 thanks to this guide > https://www.linuxbabe.com/ubuntu/upgrade-ubuntu-16-10-17-04-to-ubuntu-18-04 ...
written 26 days ago by lessismore720
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Merge two tables based on two columns (R)
... Dear all, trivial question. i have two tables that i would like to merge based on two columns. Basically i would like to translate to R what here i write in bash. 1st table (file a) a Solyc11g071810 a Solyc11g071811 a Solyc11g071812 a Solyc11g071813 a Solyc11g071814 2nd tabl ...
R written 4 months ago by lessismore720 • updated 4 months ago by RamRS25k
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associate GO ID with GO description
... Dear all, i have an enrichment output file displaying only GO IDs. Two questions: (1) Can somebody suggest a way to associate GO category description to the GO ID? Where do i retrieve such a file? Sorry for the maybe trivial question. (2) Would be also very much appreciated a tip on a tool to perf ...
go annotation written 5 months ago by lessismore720 • updated 5 months ago by Jean-Karim Heriche21k
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Comment: C: GO redundancy reduction
... Because i'd like to automate it and didn't find script to do it with REVIGO. ...
written 5 months ago by lessismore720
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GO redundancy reduction
... Dear all, i have a plain text file with a list of GO that were significant in my enrichment analysis and i would like to reduce its redundancy (just like REVIGO is doing). Could you please suggest a way to do this? Preferably an R package. Output should be another plain text file. Thanks in advanc ...
R enrichment written 5 months ago by lessismore720 • updated 5 months ago by Friederike5.2k
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Comment: C: Merge multiple list of IDs and summarize with a matrix
... Hi, i updated my inputs. Can you please be more clear on how to make this? Thanks! ...
written 5 months ago by lessismore720
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Merge multiple list of IDs and summarize with a matrix
... Dear all, i have 30 different lists of gene IDs partially overlapping and i want to create a matrix where i have on the rownames all of them and the columns should correspond to the lists and indicate if the gene ID was present or not there (1 or 0). here the inputs: several .txt files list1.txt ...
R written 5 months ago by lessismore720
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Comment: C: Alternative splicing analysis following kallisto?
... Hey! So far you are the only one using this approach. I didnt find a single paper mapping RNAseq data against rice transcriptome. Thats pretty curious ...
written 8 months ago by lessismore720
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Comment: C: Modifying Edge Weights in WGCNA
... > I do not know. Your educated guess is as good as mine. I would check > the overlap of the edges. Also, depending on how you constructed both > the GCN and the GRN, one may be more reliable than the other. That > would be the GRN, right? honestly i have no idea on my data cause unfortu ...
written 9 months ago by lessismore720
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Comment: C: Modifying Edge Weights in WGCNA
... 3 questions to anwer your question. Sorry in advance :) (1) My idea is to merge this information using GCN as the base (here the doubt/question: should i keep the edges in the GRN that are already present in my GCN or should i also add extra edges from GRN to GCN). In any case i will have a mixed ...
written 9 months ago by lessismore720

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