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4
votes
15
replies
5.7k
views
8 follow
Data retrieval from GEO
Microarray GEO
updated 3 hours ago by 154k • written 8.2 years ago by ★ 1.4k
0
votes
0
replies
810
views
Comment: Comment: DESeq2 LRT test with multifactorial design
4 months ago by lessismore ★ 1.4k
3
votes
2
replies
810
views
DESeq2 LRT test with multifactorial design
test design multifactorial LRT
4 months ago by lessismore ★ 1.4k
5
votes
6
replies
1.5k
views
biological meaning /summary for similar sets of GO terms
annotation GO
updated 20 months ago by 103k • written 20 months ago by ★ 1.4k
0
votes
0
replies
1.5k
views
Comment: Comment: biological meaning /summary for similar sets of GO terms
20 months ago by lessismore ★ 1.4k
1
vote
1
reply
827
views
Huge TPM values in some tissues of an expression atlas
gene expression
updated 20 months ago by ★ 19k • written 20 months ago by ★ 1.4k
0
votes
1
reply
1.9k
views
Comment: Comment: How to filter out non-plant KEGG pathways in KEGG enrichment?
21 months ago by lessismore ★ 1.4k
0
votes
1
reply
1.4k
views
Comment: Comment: R package for functional enrichment and depletion analysis
2.6 years ago by lessismore ★ 1.4k
1
vote
3
replies
1.4k
views
R package for functional enrichment and depletion analysis
enrichment depletion
updated 2.6 years ago by 13k • written 2.6 years ago by ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: Comment: In silico evaluation of functional similarity across two sets of genes
2.7 years ago by lessismore ★ 1.4k
1
vote
2
replies
1.1k
views
In silico evaluation of functional similarity across two sets of genes
functional annotation GO similarity
2.7 years ago by lessismore ★ 1.4k
0
votes
0
replies
1.4k
views
Comment: Comment: Build a 3d protein model to compare two TF alleles and test in-silico the protei
2.7 years ago by lessismore ★ 1.4k
1
vote
2
replies
1.4k
views
Build a 3d protein model to compare two TF alleles and test in-silico the protein-DNA binding efficiency
protein-modelling protein-DNA-binding
2.7 years ago by lessismore ★ 1.4k
13
votes
15
replies
17k
views
7 follow
Error in while (change > conv) { : missing value where TRUE/FALSE needed
Combat Batch-effect RNA-Seq
updated 21 months ago by 45k • written 8.1 years ago by ★ 1.4k
0
votes
0
replies
667
views
Get the most downstream term from a list of semantically similar GO terms
GO annotation
3.2 years ago by lessismore ★ 1.4k
0
votes
0
replies
5.6k
views
Comment: Comment: Configuring sleuth for log2FC - What are the dangers?
3.3 years ago by lessismore ★ 1.4k
0
votes
3
replies
2.2k
views
updated GO dataframe in R
r.gene ontology
updated 3.6 years ago by 7.6k • written 3.6 years ago by ★ 1.4k
6
votes
7
replies
2.3k
views
GO redundancy reduction
R enrichment
updated 3.6 years ago by ▴ 20 • written 6.4 years ago by ★ 1.4k
0
votes
0
replies
2.2k
views
Comment: Comment: updated GO dataframe in R
3.6 years ago by lessismore ★ 1.4k
0
votes
0
replies
601
views
N stretchs in high confidence genes
gene annotation family Nstretch
3.9 years ago by lessismore ★ 1.4k
0
votes
0
replies
2.4k
views
Comment: Comment: how to de-aggregate a table in R
3.9 years ago by lessismore ★ 1.4k
0
votes
0
replies
3.0k
views
Circlize - Error: not enough space for cells at track index '5'.
circlize
4.0 years ago by lessismore ★ 1.4k
1
vote
1
reply
1.2k
views
ka/ks for comparing more than 2 protein sequences
selection
updated 4.0 years ago by ▴ 570 • written 4.0 years ago by ★ 1.4k
0
votes
1
reply
2.8k
views
Comment: Comment: biomaRt does not convert entrez gene id to ensembl gene id
4.0 years ago by lessismore ★ 1.4k
0
votes
0
replies
8.5k
views
Comment: Comment: How to know synonymous and non-synonymous SNPs from transcriptome sequencing
4.1 years ago by lessismore ★ 1.4k
0
votes
1
reply
8.5k
views
Comment: Comment: How to know synonymous and non-synonymous SNPs from transcriptome sequencing
4.1 years ago by lessismore ★ 1.4k
0
votes
1
reply
9.3k
views
Difference between "Original tree" and "Bootstrap consensus tree" in Mega X software for phylogeny
Mega Phylogeny
updated 4.4 years ago by • 0 • written 5.0 years ago by ★ 1.4k
0
votes
0
replies
1.2k
views
FIMO --max-stored-scores option
fimo meme
4.7 years ago by lessismore ★ 1.4k
0
votes
0
replies
833
views
Get full output with hmmscan in bio3d
bio3d
4.7 years ago by lessismore ★ 1.4k
2
votes
0
replies
1.5k
views
Answer: A: Extract column which contain <20 exons in a transcript
4.7 years ago by lessismore ★ 1.4k
2
votes
0
replies
2.1k
views
Comment: C: What are the best scATAC-seq computational pipelines / tools / literature curren
4.7 years ago by lessismore ★ 1.4k
1
vote
1
reply
2.1k
views
Comment: A: Plot phylogenetic tree with all ancestor nodes
4.7 years ago by lessismore ★ 1.4k
1
vote
0
replies
1.9k
views
Comment: C: Cytoscape - long list of proteins, very messy result
4.7 years ago by lessismore ★ 1.4k
1
vote
0
replies
786
views
Compare the output of two MEME analyses
meme motif analysis
4.7 years ago by lessismore ★ 1.4k
1
vote
1
reply
2.2k
views
Comment: C: Kept getting issue when using ImmGenData() in SingleR
4.7 years ago by lessismore ★ 1.4k
2
votes
0
replies
1.4k
views
Comment: C: Retrieve initial query in getBM()
4.7 years ago by lessismore ★ 1.4k
3
votes
1
reply
1.1k
views
Answer: C: Reorder "matrix" "array"
4.7 years ago by lessismore ★ 1.4k
1
vote
1
reply
1.8k
views
Comment: C: Problems with the same gene names in R, any help?
4.7 years ago by lessismore ★ 1.4k
0
votes
1
reply
1.8k
views
Answer: A: Problems with the same gene names in R, any help?
4.7 years ago by lessismore ★ 1.4k
2
votes
1
reply
2.0k
views
Comment: C: diferentially expressed ensembl ID to gene symbol conversion
4.7 years ago by lessismore ★ 1.4k
1
vote
1
reply
2.0k
views
Answer: C: diferentially expressed ensembl ID to gene symbol conversion
4.7 years ago by lessismore ★ 1.4k
0
votes
0
replies
11k
views
Comment: C: How do I extract Fasta Sequences based on a list of IDs?
4.8 years ago by lessismore ★ 1.4k
0
votes
0
replies
851
views
Compare TFBS of a specific set of genes across two species
structural diversity comparative genomics
4.8 years ago by lessismore ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: C: Filter for nonoverlapping genomic hits and keep the longest one
4.8 years ago by lessismore ★ 1.4k
1
vote
2
replies
1.1k
views
Filter for nonoverlapping genomic hits and keep the longest one
genomic ranges genomics filtering
updated 4.8 years ago by 13k • written 4.8 years ago by ★ 1.4k
0
votes
0
replies
3.8k
views
Comment: C: Filtering the result of transcription factor binding matrix prediction from PWM
4.8 years ago by lessismore ★ 1.4k
0
votes
0
replies
1.4k
views
Comment: C: Revive old microarray data linking it to new gene annotations
5.0 years ago by lessismore ★ 1.4k
0
votes
0
replies
1.4k
views
Comment: C: Revive old microarray data linking it to new gene annotations
5.0 years ago by lessismore ★ 1.4k
2
votes
4
replies
1.4k
views
Revive old microarray data linking it to new gene annotations
microarray annotations integration
5.0 years ago by lessismore ★ 1.4k
0
votes
0
replies
2.1k
views
Comment: C: Download entire gene sequences (including UTRs) with BioMart-Ensembl
5.1 years ago by lessismore ★ 1.4k
273 results • Page 1 of 6
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