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1
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1
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14k
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Comment: C: Introducing FilterByTile: Remove Low-Quality Reads Without Adding Bias
8.3 years ago by Brian Bushnell 20k
1
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1
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4.3k
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Comment: C: Different trimming SLIDINGWINDOW threshold value mapping comparison
8.3 years ago by Brian Bushnell 20k
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2
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4.4k
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Answer: A: How to get nucleotide sequence from BAM file
8.3 years ago by Brian Bushnell 20k
3
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1
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4.3k
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Answer: A: Different trimming SLIDINGWINDOW threshold value mapping comparison
8.3 years ago by Brian Bushnell 20k
3
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0
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3.7k
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Answer: A: Alphabetizing fasta sequence
8.3 years ago by Brian Bushnell 20k
1
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0
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11k
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Comment: C: FASTQ to SAM File converter
8.3 years ago by Brian Bushnell 20k
0
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1
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11k
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Comment: C: FASTQ to SAM File converter
8.3 years ago by Brian Bushnell 20k
2
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3
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11k
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Comment: C: FASTQ to SAM File converter
8.3 years ago by Brian Bushnell 20k
8
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1
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5.0k
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Answer: A: Samtools sorting by read names vs. chromosomal coordinates
8.3 years ago by Brian Bushnell 20k
0
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1
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1.4k
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Comment: C: which indel to consider
8.3 years ago by Brian Bushnell 20k
0
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0
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3.4k
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Comment: C: FastQC low %A in per base sequence content
8.3 years ago by Brian Bushnell 20k
0
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0
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3.3k
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Answer: A: Calculate numbers of indels <=2 nt within sam
8.3 years ago by Brian Bushnell 20k
1
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1
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4.2k
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Comment: C: How to do genome guided denovo assembly? If not, how to align the denovo assembl
8.3 years ago by Brian Bushnell 20k
1
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1
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1.6k
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Comment: C: proxy SNPs for Fine mapping
8.3 years ago by Brian Bushnell 20k
0
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2
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4.2k
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Comment: C: How to do genome guided denovo assembly? If not, how to align the denovo assembl
8.3 years ago by Brian Bushnell 20k
0
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1
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5.1k
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Comment: C: Getting 1000 Genomes phase one MAF values
8.3 years ago by Brian Bushnell 20k
2
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2
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5.1k
views
Comment: C: Getting 1000 Genomes phase one MAF values
8.3 years ago by Brian Bushnell 20k
1
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1
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4.2k
views
Comment: C: How to do genome guided denovo assembly? If not, how to align the denovo assembl
8.3 years ago by Brian Bushnell 20k
1
vote
2
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14k
views
Comment: C: Introducing FilterByTile: Remove Low-Quality Reads Without Adding Bias
8.3 years ago by Brian Bushnell 20k
1
vote
1
reply
14k
views
Comment: C: How do I access genome coverage using SPADES?
8.3 years ago by Brian Bushnell 20k
1
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1
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3.1k
views
Comment: C: Chaos game representation application using Biopython
8.3 years ago by Brian Bushnell 20k
0
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1
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4.2k
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Comment: C: How to do genome guided denovo assembly? If not, how to align the denovo assembl
8.3 years ago by Brian Bushnell 20k
0
votes
1
reply
4.2k
views
Comment: C: How to do genome guided denovo assembly? If not, how to align the denovo assembl
8.3 years ago by Brian Bushnell 20k
2
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0
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11k
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Answer: A: Calculating Mapping Coverage
8.3 years ago by Brian Bushnell 20k
0
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0
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1.9k
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Answer: A: Filter multisample vcf file with SNPs from one individual?
8.3 years ago by Brian Bushnell 20k
3
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0
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3.1k
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Answer: A: Parsing the NR database
8.3 years ago by Brian Bushnell 20k
0
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0
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1.4k
views
Comment: C: Error in BLASR 'name in reference not unique'
8.3 years ago by Brian Bushnell 20k
3
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1
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5.3k
views
Comment: C: Alignment time of TopHat (v.2.1.1) increases while increasing threads (using mul
8.3 years ago by Brian Bushnell 20k
0
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0
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20k
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Comment: C: Lossless ALAPY Fastq Compressor (now with stdin/stdout support)
8.3 years ago by Brian Bushnell 20k
1
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0
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38k
views
Comment: C: What does BAF mean?
8.3 years ago by Brian Bushnell 20k
1
vote
1
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5.5k
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Comment: C: Cutadapt not trimming adapters in PE mode
8.3 years ago by Brian Bushnell 20k
0
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0
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4.2k
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Answer: A: SNP analysis between two bacterial genomes
8.3 years ago by Brian Bushnell 20k
0
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0
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2.2k
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Comment: C: How to tell the mismatches come from sequencing errors or a different haplotype?
8.3 years ago by Brian Bushnell 20k
0
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1
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2.2k
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Comment: C: How to tell the mismatches come from sequencing errors or a different haplotype?
8.3 years ago by Brian Bushnell 20k
0
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1
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38k
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Comment: C: What does BAF mean?
8.3 years ago by Brian Bushnell 20k
0
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1
reply
2.2k
views
Comment: C: How to tell the mismatches come from sequencing errors or a different haplotype?
8.3 years ago by Brian Bushnell 20k
0
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1
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38k
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Comment: C: What does BAF mean?
8.3 years ago by Brian Bushnell 20k
0
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1
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3.6k
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Comment: C: Are there NGS-based CNV callers that utilise allele frequency?
8.3 years ago by Brian Bushnell 20k
0
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1
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3.6k
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Comment: C: Are there NGS-based CNV callers that utilise allele frequency?
8.3 years ago by Brian Bushnell 20k
0
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0
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2.0k
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Comment: C: From bam paired files to fasta
8.3 years ago by Brian Bushnell 20k
5
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0
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4.0k
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Answer: A: Bowtie2/HISAT using single-end to generate FPKM???
8.3 years ago by Brian Bushnell 20k
1
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1
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5.3k
views
Comment: C: Are these false somatic variants? Visual inspection with IGV
8.3 years ago by Brian Bushnell 20k
0
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0
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5.3k
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Comment: C: Are these false somatic variants? Visual inspection with IGV
8.3 years ago by Brian Bushnell 20k
0
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0
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5.4k
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Comment: C: In GWAS Studies, how to understand "97 SNPs explain 2.7% of BMI"?
8.3 years ago by Brian Bushnell 20k
0
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0
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10k
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Answer: A: What Are The Open Source Alternatives To Gatk?
8.3 years ago by Brian Bushnell 20k
2
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1
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5.3k
views
Comment: C: Are these false somatic variants? Visual inspection with IGV
8.3 years ago by Brian Bushnell 20k
4
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0
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3.0k
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Answer: A: detect large indels
8.3 years ago by Brian Bushnell 20k
1
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0
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4.0k
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Comment: C: Phred score check for BAM files
8.4 years ago by Brian Bushnell 20k
0
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0
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3.5k
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Comment: C: How can we find the 16S rRNA sequence of an organism from NCBI?
8.4 years ago by Brian Bushnell 20k
1
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0
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41k
views
Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
8.4 years ago by Brian Bushnell 20k
2,083 results • Page 15 of 42
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