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Comment: Comment: BBSketch - A Tool for Rapid Sequence Comparison
12 months ago by Brian Bushnell 18k
26
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22
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12k
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10 follow
Tool: BBSketch - A Tool for Rapid Sequence Comparison
minhash sketch bbmap blast
updated 4 months ago by 40k • written 6.6 years ago by 18k
3
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1
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1.1k
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Answer: Answer: Help with clumpify.sh
13 months ago by Brian Bushnell 18k
2
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1
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1.5k
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Comment: Comment: BBSplit index creation seems to use a subset of the references provided
15 months ago by Brian Bushnell 18k
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1
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1.5k
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Answer: Answer: BBSplit index creation seems to use a subset of the references provided
15 months ago by Brian Bushnell 18k
0
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1
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751
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Comment: Comment: Clumpify on multiple files
20 months ago by Brian Bushnell 18k
3
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1
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1.8k
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Answer: C: BBMap tool error - randomreads.sh
2.8 years ago by Brian Bushnell 18k
77
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86
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27k
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20 follow
Tool: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates.
clumpify storage bbmap pigz compression
updated 3 months ago by 40k • written 6.8 years ago by 18k
0
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0
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2.0k
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Comment: C: Can Tophat2 Align a Book?
updated 3.3 years ago by 40k • written 8.1 years ago by 18k
0
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0
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27k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
3.3 years ago by Brian Bushnell 18k
4
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1
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2.0k
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Answer: A: Current challenges in SARS-CoV-2 analysis?
3.5 years ago by Brian Bushnell 18k
2
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2
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7.3k
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Answer: Answer: Calculate percentage of bases covered less than nX in targeted sequencing experi
updated 18 months ago by 40k • written 8.7 years ago by 18k
0
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1
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12k
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Comment: C: BBSketch - A Tool for Rapid Sequence Comparison
updated 3.7 years ago by 134k • written 3.7 years ago by 18k
0
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1
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2.6k
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Comment: C: BBMap NullPointer during initialization
updated 3.7 years ago by 40k • written 7.6 years ago by 18k
2
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1
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13k
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Comment: C: How to identify 16s sequences from binning data(contigs)?
updated 3.7 years ago by 40k • written 7.6 years ago by 18k
1
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0
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4.2k
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Comment: C: kmer alignment with mismatch
updated 3.7 years ago by 40k • written 7.6 years ago by 18k
2
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1
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12k
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Comment: C: RNA-seq differential expression analysis, which aligner to choose between BWA/to
updated 3.7 years ago by 40k • written 7.6 years ago by 18k
8
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0
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20k
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Comment: C: Splice aware aligner - what does it mean?
updated 3.7 years ago by 40k • written 7.6 years ago by 18k
1
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1
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1.5k
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Comment: C: Remove duplicates in two databases
updated 3.7 years ago by 40k • written 7.6 years ago by 18k
7
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0
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19k
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Answer: A: Extract sequence with header from a fasta file with specific ID given in another
updated 3.7 years ago by 40k • written 8.7 years ago by 18k
1
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1
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2.2k
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Comment: C: Identify sequencing adaptor contamination programatically
updated 3.7 years ago by 40k • written 7.7 years ago by 18k
0
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0
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2.9k
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Answer: A: Extract only sequences that have N nucleotides
updated 3.7 years ago by 40k • written 7.7 years ago by 18k
1
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1
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10k
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Comment: C: How detrimental are duplicate reads in RNAseq experiments?
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
1
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1
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4.2k
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Comment: C: samtools merge extremely slow
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
1
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1
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4.2k
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Answer: A: samtools merge extremely slow
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
1
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2
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2.2k
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Comment: C: Identify sequencing adaptor contamination programatically
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
1
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0
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1.4k
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Answer: A: Fast imputation of variants for 4x WGS?
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
2
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0
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2.3k
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Answer: A: Extracting nucleotide immediately prior to mapped read
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
4
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1
reply
10k
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Answer: A: How detrimental are duplicate reads in RNAseq experiments?
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
0
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0
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1.3k
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Answer: A: Bowtie2 - Force alignment of terminal mismatches
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
0
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0
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11k
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Comment: C: MarkDuplicates memory issue
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
0
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0
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1.8k
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Comment: C: how sequenced? dna between the pair-end reads
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
0
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0
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3.6k
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Answer: C: Does anyone know any specific 1000 genomes WGS data that is around 30x coverage?
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
0
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1
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2.2k
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Comment: C: Reduce redundancy of alignment based on taxonomy and identity
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
0
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1
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11k
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Comment: C: MarkDuplicates memory issue
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
0
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1
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11k
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Comment: C: MarkDuplicates memory issue
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
3
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0
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14k
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Answer: A: How to efficiently remove a list of reads from BAM file?
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
0
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1
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11k
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Comment: C: MarkDuplicates memory issue
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
1
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1
reply
3.6k
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Answer: A: Buying computational resources vs. renting allocation on cluster
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
0
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1
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2.1k
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Comment: C: Assembly reads from only one file
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
1
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1
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2.1k
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Comment: C: Assembly reads from only one file
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
1
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1
reply
2.1k
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Answer: A: Assembly reads from only one file
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
1
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1
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2.7k
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Comment: C: how split the paired-end reads to mutilble paired-end reads?
updated 3.8 years ago by 40k • written 7.7 years ago by 18k
0
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1
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8.5k
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Answer: A: Looking for reputable tool to find low complexity regions in FASTQ or BAM files
updated 3.8 years ago by 40k • written 7.8 years ago by 18k
1
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0
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3.2k
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Answer: A: get deletion coverage from .bam file
updated 3.8 years ago by 40k • written 7.8 years ago by 18k
0
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0
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2.0k
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Comment: C: Mapping ratio when alignment 37bp human NGS reads to mouse genome
updated 3.8 years ago by 40k • written 7.8 years ago by 18k
0
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1
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4.9k
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Answer: A: Plasmid Genome Assembly
updated 3.8 years ago by 40k • written 7.8 years ago by 18k
0
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0
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6.7k
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Comment: C: Are XA: tagged reads == SA: tagged BWAMEM aligned reads?
updated 3.8 years ago by 40k • written 7.8 years ago by 18k
2
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1
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19k
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Comment: C: how do I run repeat masker
updated 3.8 years ago by 40k • written 7.8 years ago by 18k
2
votes
1
reply
19k
views
Comment: C: how do I run repeat masker
updated 3.8 years ago by 40k • written 7.8 years ago by 18k
1,907 results • Page 1 of 39
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