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Comment: Comment: Poly-A trimming for WGBS
22 months ago by Brian Bushnell 20k
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1.5k
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Comment: Comment: Conceptual question about open reading frames
22 months ago by Brian Bushnell 20k
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1.1k
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Answer: Answer: Trimming pair end fastq files merged not interleaved
22 months ago by Brian Bushnell 20k
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3.5k
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Answer: Answer: Poly-A trimming for WGBS
22 months ago by Brian Bushnell 20k
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1
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1.3k
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Comment: Comment: Query regarding callsets used as known sites in Variant Calling
22 months ago by Brian Bushnell 20k
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1.5k
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Comment: Comment: salmon for gene expression quantification
22 months ago by Brian Bushnell 20k
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2.0k
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Comment: Comment: Quality filtering prior to pseudoalignment
22 months ago by Brian Bushnell 20k
1
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3.2k
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Comment: Comment: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
22 months ago by Brian Bushnell 20k
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1.1k
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Answer: Answer: how to create a consensus sequence from different assemblies
22 months ago by Brian Bushnell 20k
2
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3.2k
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Comment: Comment: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
22 months ago by Brian Bushnell 20k
2
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2
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3.2k
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Answer: Answer: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
22 months ago by Brian Bushnell 20k
1
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1
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1.5k
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Answer: Answer: Conceptual question about open reading frames
22 months ago by Brian Bushnell 20k
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1.0k
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Answer: Answer: Do threads matter for host DNA removal with bbmap?
22 months ago by Brian Bushnell 20k
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1.6k
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Comment: Comment: Can clumpify.sh be used in a streaming fashion downstream of bcl-convert
22 months ago by Brian Bushnell 20k
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1.9k
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Answer: Answer: Detect contaminating organism
22 months ago by Brian Bushnell 20k
2
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2
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3.7k
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Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
22 months ago by Brian Bushnell 20k
1
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2.5k
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Comment: Comment: How do I know how much memory to use when piping to with BBMap suite (OutOfMemor
22 months ago by Brian Bushnell 20k
2
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1
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1.9k
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Answer: Answer: RNA-Seq with DNA contamination, any way to salvage the data?
22 months ago by Brian Bushnell 20k
1
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2
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1.6k
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Comment: Comment: Can clumpify.sh be used in a streaming fashion downstream of bcl-convert
22 months ago by Brian Bushnell 20k
1
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0
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2.0k
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Comment: Comment: Command line or python RNA-seq read simulator
22 months ago by Brian Bushnell 20k
1
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1
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3.7k
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Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
22 months ago by Brian Bushnell 20k
3
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1
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9.6k
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Answer: Answer: Randomize Read Order In Multigbp Fastq File?
22 months ago by Brian Bushnell 20k
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1
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1.3k
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Comment: Comment: trimming primers using iVar
23 months ago by Brian Bushnell 20k
1
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0
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1.8k
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Comment: Comment: Best way to use k-mers as a predictor in my neural network
23 months ago by Brian Bushnell 20k
1
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1
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3.8k
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Comment: Comment: What is the best way to compute genetic distances between FASTQ files?
23 months ago by Brian Bushnell 20k
1
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1
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3.4k
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Comment: Comment: Tools for reference-guided de novo assembly of bacterial genome
23 months ago by Brian Bushnell 20k
1
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2
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3.7k
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Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
23 months ago by Brian Bushnell 20k
1
vote
1
reply
3.7k
views
Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
23 months ago by Brian Bushnell 20k
3
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1
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3.4k
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Answer: Answer: Tools for reference-guided de novo assembly of bacterial genome
23 months ago by Brian Bushnell 20k
3
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1
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1.4k
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Answer: Answer: Exception in thread "main" java.lang.RuntimeException: Sequence and quality leng
23 months ago by Brian Bushnell 20k
1
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1
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3.8k
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Comment: Comment: What is the best way to compute genetic distances between FASTQ files?
23 months ago by Brian Bushnell 20k
1
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0
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3.8k
views
Comment: Comment: What is the best way to compute genetic distances between FASTQ files?
23 months ago by Brian Bushnell 20k
3
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1
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3.8k
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Answer: Answer: What is the best way to compute genetic distances between FASTQ files?
23 months ago by Brian Bushnell 20k
0
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0
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2.2k
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Comment: Comment: Aligner with statistics included?
23 months ago by Brian Bushnell 20k
0
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0
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1.1k
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Comment: Comment: Complexity curve for PE fastq files
23 months ago by Brian Bushnell 20k
1
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0
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1.6k
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Answer: Answer: Small RNA sequencing using Illumina 2 channel SBS: how to deal with Gs?
23 months ago by Brian Bushnell 20k
1
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1
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1.1k
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Answer: Answer: Complexity curve for PE fastq files
23 months ago by Brian Bushnell 20k
3
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1
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2.5k
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Comment: Comment: NGS one-liner to call variants
23 months ago by Brian Bushnell 20k
3
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1
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1.7k
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Answer: Answer: What are unbinned contigs ?
23 months ago by Brian Bushnell 20k
1
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0
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1.6k
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Comment: Comment: BBtools callvariants.sh
23 months ago by Brian Bushnell 20k
1
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2
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1.6k
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Answer: Answer: BBtools callvariants.sh
23 months ago by Brian Bushnell 20k
0
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0
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4.3k
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Answer: Answer: How to discard alignments from SAM/BAM file that have mismatches
23 months ago by Brian Bushnell 20k
0
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0
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3.3k
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Comment: Comment: Simulate reads for positions in a vcf file
23 months ago by Brian Bushnell 20k
1
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0
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1.7k
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Answer: Answer: Repeat detection/masking in bacteria
23 months ago by Brian Bushnell 20k
0
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0
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4.3k
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Comment: Comment: GATK memory error with Java
23 months ago by Brian Bushnell 20k
0
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0
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1.4k
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Answer: Answer: Deduplication
23 months ago by Brian Bushnell 20k
0
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0
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4.4k
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Answer: Answer: Aligning very short sequences using bowtie2, I need fine control over how many m
23 months ago by Brian Bushnell 20k
1
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0
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2.0k
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Answer: Answer: Mitochondrial contig identification in fungal genome assemblies
23 months ago by Brian Bushnell 20k
0
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0
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3.0k
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Comment: Comment: Check Strandedness
23 months ago by Brian Bushnell 20k
0
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0
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1.3k
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Comment: Comment: Allele numbers and frequencies in X and Y chr?
23 months ago by Brian Bushnell 20k
2,083 results • Page 3 of 42
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