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Answer: Answer: bbduk.sh trimming to BAM output file
3 months ago by Brian Bushnell 20k
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683
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Answer: Answer: Integration of paired and single-end SRA
10 months ago by Brian Bushnell 20k
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2.5k
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Answer: Answer: KeepBothReads in Trimmomatic
10 months ago by Brian Bushnell 20k
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Answer: Answer: How can you determine the mutation rate of mitochondrial DNA for your (Grasshopp
10 months ago by Brian Bushnell 20k
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2.2k
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Answer: Answer: Trimmomatic or Cutadapt not Trimming my Adapters even though I see them clearly
10 months ago by Brian Bushnell 20k
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1.2k
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Answer: Answer: Understanding bedtools coverage for datasets with in-dels.
10 months ago by Brian Bushnell 20k
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2.2k
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Answer: Answer: Find all sequences with adapters without trimming them off
10 months ago by Brian Bushnell 20k
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1.1k
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Answer: Answer: Awesome awesomeness bioinformatics
10 months ago by Brian Bushnell 20k
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2.3k
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Answer: Answer: comparison between a selected genes of a new strain and the same genes of the re
10 months ago by Brian Bushnell 20k
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653
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Answer: Answer: Genomic Context Analysis
10 months ago by Brian Bushnell 20k
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982
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Answer: Answer: Is it possible to have a mitochondrial genome of size 30-40kbp in insects?
12 months ago by Brian Bushnell 20k
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1.8k
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Answer: Answer: cutadapt tool
16 months ago by Brian Bushnell 20k
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845
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Answer: Answer: Sequence Duplication Levels in targeted sequencing
16 months ago by Brian Bushnell 20k
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6.0k
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Answer: Answer: how to know what adapter sequences to trim for RNA-seq?
16 months ago by Brian Bushnell 20k
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1.4k
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Answer: Answer: Variant caller for Ion Torrent data
16 months ago by Brian Bushnell 20k
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2.7k
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Answer: Answer: Processing fastq files for genome assembly
16 months ago by Brian Bushnell 20k
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20k
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Answer: Answer: Generating consensus sequence from bam file
16 months ago by Brian Bushnell 20k
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1.5k
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Answer: Answer: Target deletions with adaptive sampling
16 months ago by Brian Bushnell 20k
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1.7k
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Answer: Answer: Getting fasta file from the VCF after variant calling
16 months ago by Brian Bushnell 20k
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1.3k
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Answer: Answer: PacBio subreads.fastq files?
19 months ago by Brian Bushnell 20k
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6.6k
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Answer: Answer: What apps can read large FASTQ files on Windows?
19 months ago by Brian Bushnell 20k
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2.3k
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Answer: Answer: Read count vs Depth
19 months ago by Brian Bushnell 20k
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1.2k
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Answer: Answer: Low coverage whole genome sequencing reveal excess heterozygosity for multiple S
19 months ago by Brian Bushnell 20k
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3.0k
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Answer: Answer: SPAdes error: finished abnormally, OS return value: 21
20 months ago by Brian Bushnell 20k
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1.4k
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Answer: Answer: subset a bam file
20 months ago by Brian Bushnell 20k
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1.9k
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Answer: Answer: SNPs of a specific mouse strain
20 months ago by Brian Bushnell 20k
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1.3k
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Answer: Answer: selection of reference genome
20 months ago by Brian Bushnell 20k
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2.2k
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Answer: Answer: How to filter .fasta file based on conditional statement
20 months ago by Brian Bushnell 20k
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1.8k
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Answer: Answer: Working with NCBI downloadable Datasets
20 months ago by Brian Bushnell 20k
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1.9k
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Answer: Answer: Find all locations of aligned reads with MQ (Mapping Quality) = 0.
20 months ago by Brian Bushnell 20k
2
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1.3k
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Answer: Answer: Is there a good software to generate test genomics data?
20 months ago by Brian Bushnell 20k
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676
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Answer: Answer: Shorten Illumina reads
20 months ago by Brian Bushnell 20k
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1.2k
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Answer: Answer: Novaseq read coverage needed for demultiplexing
20 months ago by Brian Bushnell 20k
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2.5k
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Answer: Answer: BaseRecalibrator takes forever to run. Any suggestions?
20 months ago by Brian Bushnell 20k
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3
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4.0k
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Answer: Answer: Bbtools callvariant multisample mode, + base recalibration
20 months ago by Brian Bushnell 20k
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0
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977
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Answer: Answer: Trimming pair end fastq files merged not interleaved
20 months ago by Brian Bushnell 20k
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3.2k
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Answer: Answer: Poly-A trimming for WGBS
20 months ago by Brian Bushnell 20k
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0
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984
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Answer: Answer: how to create a consensus sequence from different assemblies
20 months ago by Brian Bushnell 20k
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2
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3.0k
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Answer: Answer: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
20 months ago by Brian Bushnell 20k
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1
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1.4k
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Answer: Answer: Conceptual question about open reading frames
20 months ago by Brian Bushnell 20k
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0
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942
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Answer: Answer: Do threads matter for host DNA removal with bbmap?
20 months ago by Brian Bushnell 20k
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0
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1.7k
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Answer: Answer: Detect contaminating organism
20 months ago by Brian Bushnell 20k
2
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1
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1.8k
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Answer: Answer: RNA-Seq with DNA contamination, any way to salvage the data?
20 months ago by Brian Bushnell 20k
3
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1
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9.3k
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Answer: Answer: Randomize Read Order In Multigbp Fastq File?
20 months ago by Brian Bushnell 20k
3
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1
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3.2k
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Answer: Answer: Tools for reference-guided de novo assembly of bacterial genome
21 months ago by Brian Bushnell 20k
3
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1
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1.3k
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Answer: Answer: Exception in thread "main" java.lang.RuntimeException: Sequence and quality leng
21 months ago by Brian Bushnell 20k
3
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1
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3.5k
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Answer: Answer: What is the best way to compute genetic distances between FASTQ files?
21 months ago by Brian Bushnell 20k
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1.4k
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Answer: Answer: Small RNA sequencing using Illumina 2 channel SBS: how to deal with Gs?
21 months ago by Brian Bushnell 20k
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1
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992
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Answer: Answer: Complexity curve for PE fastq files
21 months ago by Brian Bushnell 20k
3
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1
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1.6k
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Answer: Answer: What are unbinned contigs ?
21 months ago by Brian Bushnell 20k
632 results • Page 1 of 13
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