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Answer: Answer: SPAdes error: finished abnormally, OS return value: 21
20 hours ago by Brian Bushnell 19k
0
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1
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291
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Answer: Answer: subset a bam file
3 days ago by Brian Bushnell 19k
1
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1
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405
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Answer: Answer: SNPs of a specific mouse strain
4 days ago by Brian Bushnell 19k
3
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1
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359
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Answer: Answer: selection of reference genome
4 days ago by Brian Bushnell 19k
3
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1
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473
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Answer: Answer: How to filter .fasta file based on conditional statement
5 days ago by Brian Bushnell 19k
1
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1
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560
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Answer: Answer: Working with NCBI downloadable Datasets
6 days ago by Brian Bushnell 19k
1
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0
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227
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Answer: Answer: Find all locations of aligned reads with MQ (Mapping Quality) = 0.
6 days ago by Brian Bushnell 19k
2
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0
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465
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Answer: Answer: Is there a good software to generate test genomics data?
4 days ago by Brian Bushnell 19k
2
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0
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202
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Answer: Answer: Shorten Illumina reads
6 days ago by Brian Bushnell 19k
0
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0
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339
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Answer: Answer: Novaseq read coverage needed for demultiplexing
9 days ago by Brian Bushnell 19k
1
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0
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1.6k
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Answer: Answer: BaseRecalibrator takes forever to run. Any suggestions?
10 days ago by Brian Bushnell 19k
4
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3
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1.0k
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Answer: Answer: Bbtools callvariant multisample mode, + base recalibration
10 days ago by Brian Bushnell 19k
0
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0
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166
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Answer: Answer: Trimming pair end fastq files merged not interleaved
12 days ago by Brian Bushnell 19k
0
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1
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905
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Answer: Answer: Poly-A trimming for WGBS
12 days ago by Brian Bushnell 19k
0
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0
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167
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Answer: Answer: how to create a consensus sequence from different assemblies
13 days ago by Brian Bushnell 19k
2
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2
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799
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Answer: Answer: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
14 days ago by Brian Bushnell 19k
1
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1
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298
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Answer: Answer: Conceptual question about open reading frames
16 days ago by Brian Bushnell 19k
1
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0
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249
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Answer: Answer: Do threads matter for host DNA removal with bbmap?
18 days ago by Brian Bushnell 19k
0
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0
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565
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Answer: Answer: Detect contaminating organism
19 days ago by Brian Bushnell 19k
1
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1
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464
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Answer: Answer: RNA-Seq with DNA contamination, any way to salvage the data?
19 days ago by Brian Bushnell 19k
1
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0
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7.1k
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Answer: Answer: Randomize Read Order In Multigbp Fastq File?
21 days ago by Brian Bushnell 19k
1
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1
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420
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Answer: Answer: Tools for reference-guided de novo assembly of bacterial genome
4 weeks ago by Brian Bushnell 19k
3
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1
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331
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Answer: Answer: Exception in thread "main" java.lang.RuntimeException: Sequence and quality leng
4 weeks ago by Brian Bushnell 19k
3
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1
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908
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Answer: Answer: What is the best way to compute genetic distances between FASTQ files?
4 weeks ago by Brian Bushnell 19k
1
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0
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325
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Answer: Answer: Small RNA sequencing using Illumina 2 channel SBS: how to deal with Gs?
5 weeks ago by Brian Bushnell 19k
1
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1
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325
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Answer: Answer: Complexity curve for PE fastq files
5 weeks ago by Brian Bushnell 19k
2
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1
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433
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Answer: Answer: What are unbinned contigs ?
5 weeks ago by Brian Bushnell 19k
1
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2
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616
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Answer: Answer: BBtools callvariants.sh
5 weeks ago by Brian Bushnell 19k
0
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0
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1.1k
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Answer: Answer: How to discard alignments from SAM/BAM file that have mismatches
5 weeks ago by Brian Bushnell 19k
1
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0
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623
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Answer: Answer: Repeat detection/masking in bacteria
5 weeks ago by Brian Bushnell 19k
0
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0
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569
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Answer: Answer: Deduplication
5 weeks ago by Brian Bushnell 19k
0
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0
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1.2k
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Answer: Answer: Aligning very short sequences using bowtie2, I need fine control over how many m
5 weeks ago by Brian Bushnell 19k
1
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0
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556
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Answer: Answer: Mitochondrial contig identification in fungal genome assemblies
5 weeks ago by Brian Bushnell 19k
0
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0
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298
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Answer: Answer: Partition reads in BAM file by MAG
6 weeks ago by Brian Bushnell 19k
1
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0
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1.0k
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Answer: Answer: Can BWA (mem) detect longer deletions?
6 weeks ago by Brian Bushnell 19k
0
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0
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705
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Answer: Answer: Average Coverage after Assembly (Spades)
6 weeks ago by Brian Bushnell 19k
1
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1
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522
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Answer: Answer: Detect STRs in illumina library
6 weeks ago by Brian Bushnell 19k
1
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0
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852
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Answer: Answer: What is the correct procedure to generate a consensus bacterial sequence?
6 weeks ago by Brian Bushnell 19k
0
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0
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387
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Answer: Answer: Lower alignment rate when using collapsed reads
6 weeks ago by Brian Bushnell 19k
0
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0
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751
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Answer: Answer: Recommendations for extending contigs from denovo assembly to identify SV insert
6 weeks ago by Brian Bushnell 19k
2
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1
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2.1k
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Answer: Answer: Convert amino acid sequences into nucleotide sequences
6 weeks ago by Brian Bushnell 19k
0
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1
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479
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Answer: Answer: Viral positive and negative strand with paired sequencing and bowtie
6 weeks ago by Brian Bushnell 19k
0
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0
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382
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Answer: Answer: How to choose the best tool for variant trio analysis
6 weeks ago by Brian Bushnell 19k
2
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1
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569
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Answer: Answer: Aligner with statistics included?
updated 6 weeks ago by 41k • written 6 weeks ago by 19k
1
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1
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906
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Answer: Answer: Building reference dbSNP file for citrus sinensis using 80 WGS samples
6 weeks ago by Brian Bushnell 19k
0
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0
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859
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Answer: Answer: Which alignment for whole bacterial genomes for phylogenetic tree?
6 weeks ago by Brian Bushnell 19k
2
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0
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310
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Answer: Answer: Estimating Index Hopping
6 weeks ago by Brian Bushnell 19k
1
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1
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527
views
Answer: Answer: checkstrand tool (from BBMap suite) question
updated 6 weeks ago by 136k • written 6 weeks ago by 19k
1
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3
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527
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Answer: Answer: checkstrand tool (from BBMap suite) question
updated 6 weeks ago by 136k • written 6 weeks ago by 19k
3
votes
1
reply
1.2k
views
Answer: Answer: Help with clumpify.sh
15 months ago by Brian Bushnell 19k
609 results • Page 1 of 13
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