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Answer: Answer: cutadapt tool
8 weeks ago by Brian Bushnell 20k
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324
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Answer: Answer: Sequence Duplication Levels in targeted sequencing
8 weeks ago by Brian Bushnell 20k
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1.9k
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Answer: Answer: how to know what adapter sequences to trim for RNA-seq?
8 weeks ago by Brian Bushnell 20k
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408
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Answer: Answer: Variant caller for Ion Torrent data
8 weeks ago by Brian Bushnell 20k
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930
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Answer: Answer: Processing fastq files for genome assembly
8 weeks ago by Brian Bushnell 20k
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15k
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Answer: Answer: Generating consensus sequence from bam file
8 weeks ago by Brian Bushnell 20k
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604
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Answer: Answer: Target deletions with adaptive sampling
8 weeks ago by Brian Bushnell 20k
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618
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Answer: Answer: Getting fasta file from the VCF after variant calling
8 weeks ago by Brian Bushnell 20k
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475
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Answer: Answer: PacBio subreads.fastq files?
4 months ago by Brian Bushnell 20k
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1.8k
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Answer: Answer: What apps can read large FASTQ files on Windows?
4 months ago by Brian Bushnell 20k
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785
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Answer: Answer: Read count vs Depth
4 months ago by Brian Bushnell 20k
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1
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489
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Answer: Answer: Low coverage whole genome sequencing reveal excess heterozygosity for multiple S
5 months ago by Brian Bushnell 20k
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987
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Answer: Answer: SPAdes error: finished abnormally, OS return value: 21
5 months ago by Brian Bushnell 20k
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1
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643
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Answer: Answer: subset a bam file
5 months ago by Brian Bushnell 20k
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899
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Answer: Answer: SNPs of a specific mouse strain
5 months ago by Brian Bushnell 20k
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630
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Answer: Answer: selection of reference genome
5 months ago by Brian Bushnell 20k
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1.0k
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Answer: Answer: How to filter .fasta file based on conditional statement
5 months ago by Brian Bushnell 20k
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887
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Answer: Answer: Working with NCBI downloadable Datasets
5 months ago by Brian Bushnell 20k
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555
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Answer: Answer: Find all locations of aligned reads with MQ (Mapping Quality) = 0.
5 months ago by Brian Bushnell 20k
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707
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Answer: Answer: Is there a good software to generate test genomics data?
5 months ago by Brian Bushnell 20k
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344
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Answer: Answer: Shorten Illumina reads
5 months ago by Brian Bushnell 20k
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0
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576
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Answer: Answer: Novaseq read coverage needed for demultiplexing
5 months ago by Brian Bushnell 20k
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1.9k
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Answer: Answer: BaseRecalibrator takes forever to run. Any suggestions?
5 months ago by Brian Bushnell 20k
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3
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1.7k
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Answer: Answer: Bbtools callvariant multisample mode, + base recalibration
5 months ago by Brian Bushnell 20k
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409
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Answer: Answer: Trimming pair end fastq files merged not interleaved
5 months ago by Brian Bushnell 20k
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1.5k
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Answer: Answer: Poly-A trimming for WGBS
5 months ago by Brian Bushnell 20k
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394
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Answer: Answer: how to create a consensus sequence from different assemblies
5 months ago by Brian Bushnell 20k
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2
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1.3k
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Answer: Answer: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
5 months ago by Brian Bushnell 20k
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543
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Answer: Answer: Conceptual question about open reading frames
5 months ago by Brian Bushnell 20k
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456
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Answer: Answer: Do threads matter for host DNA removal with bbmap?
5 months ago by Brian Bushnell 20k
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851
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Answer: Answer: Detect contaminating organism
5 months ago by Brian Bushnell 20k
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853
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Answer: Answer: RNA-Seq with DNA contamination, any way to salvage the data?
5 months ago by Brian Bushnell 20k
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1
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7.7k
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Answer: Answer: Randomize Read Order In Multigbp Fastq File?
6 months ago by Brian Bushnell 20k
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1
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1.0k
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Answer: Answer: Tools for reference-guided de novo assembly of bacterial genome
6 months ago by Brian Bushnell 20k
3
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1
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574
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Answer: Answer: Exception in thread "main" java.lang.RuntimeException: Sequence and quality leng
6 months ago by Brian Bushnell 20k
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1
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1.4k
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Answer: Answer: What is the best way to compute genetic distances between FASTQ files?
6 months ago by Brian Bushnell 20k
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0
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556
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Answer: Answer: Small RNA sequencing using Illumina 2 channel SBS: how to deal with Gs?
6 months ago by Brian Bushnell 20k
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1
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506
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Answer: Answer: Complexity curve for PE fastq files
6 months ago by Brian Bushnell 20k
3
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1
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719
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Answer: Answer: What are unbinned contigs ?
6 months ago by Brian Bushnell 20k
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2
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921
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Answer: Answer: BBtools callvariants.sh
6 months ago by Brian Bushnell 20k
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0
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1.8k
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Answer: Answer: How to discard alignments from SAM/BAM file that have mismatches
6 months ago by Brian Bushnell 20k
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0
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888
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Answer: Answer: Repeat detection/masking in bacteria
6 months ago by Brian Bushnell 20k
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0
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777
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Answer: Answer: Deduplication
6 months ago by Brian Bushnell 20k
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1.7k
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Answer: Answer: Aligning very short sequences using bowtie2, I need fine control over how many m
6 months ago by Brian Bushnell 20k
1
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0
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898
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Answer: Answer: Mitochondrial contig identification in fungal genome assemblies
6 months ago by Brian Bushnell 20k
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0
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416
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Answer: Answer: Partition reads in BAM file by MAG
6 months ago by Brian Bushnell 20k
1
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0
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1.6k
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Answer: Answer: Can BWA (mem) detect longer deletions?
6 months ago by Brian Bushnell 20k
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0
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922
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Answer: Answer: Average Coverage after Assembly (Spades)
6 months ago by Brian Bushnell 20k
1
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1
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705
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Answer: Answer: Detect STRs in illumina library
6 months ago by Brian Bushnell 20k
3
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1
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1.5k
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Answer: Answer: What is the correct procedure to generate a consensus bacterial sequence?
6 months ago by Brian Bushnell 20k
621 results • Page 1 of 13
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