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Comment: Comment: Query regarding callsets used as known sites in Variant Calling
23 days ago by Brian Bushnell 20k
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0
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348
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Comment: Comment: salmon for gene expression quantification
23 days ago by Brian Bushnell 20k
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0
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405
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Comment: Comment: Quality filtering prior to pseudoalignment
23 days ago by Brian Bushnell 20k
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1
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862
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Comment: Comment: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
23 days ago by Brian Bushnell 20k
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178
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Answer: Answer: how to create a consensus sequence from different assemblies
23 days ago by Brian Bushnell 20k
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0
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862
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Comment: Comment: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
24 days ago by Brian Bushnell 20k
2
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2
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862
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Answer: Answer: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
24 days ago by Brian Bushnell 20k
1
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1
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323
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Answer: Answer: Conceptual question about open reading frames
27 days ago by Brian Bushnell 20k
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0
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258
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Answer: Answer: Do threads matter for host DNA removal with bbmap?
28 days ago by Brian Bushnell 20k
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0
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641
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Comment: Comment: Can clumpify.sh be used in a streaming fashion downstream of bcl-convert
28 days ago by Brian Bushnell 20k
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0
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592
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Answer: Answer: Detect contaminating organism
29 days ago by Brian Bushnell 20k
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2
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1.3k
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Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
29 days ago by Brian Bushnell 20k
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0
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1.5k
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Comment: Comment: How do I know how much memory to use when piping to with BBMap suite (OutOfMemor
4 weeks ago by Brian Bushnell 20k
1
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1
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485
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Answer: Answer: RNA-Seq with DNA contamination, any way to salvage the data?
4 weeks ago by Brian Bushnell 20k
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2
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641
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Comment: Comment: Can clumpify.sh be used in a streaming fashion downstream of bcl-convert
4 weeks ago by Brian Bushnell 20k
1
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0
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625
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Comment: Comment: Command line or python RNA-seq read simulator
4 weeks ago by Brian Bushnell 20k
1
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1
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1.3k
views
Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
4 weeks ago by Brian Bushnell 20k
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0
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7.1k
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Answer: Answer: Randomize Read Order In Multigbp Fastq File?
4 weeks ago by Brian Bushnell 20k
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1
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395
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Comment: Comment: trimming primers using iVar
5 weeks ago by Brian Bushnell 20k
1
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0
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387
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Comment: Comment: Best way to use k-mers as a predictor in my neural network
5 weeks ago by Brian Bushnell 20k
1
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1
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961
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Comment: Comment: What is the best way to compute genetic distances between FASTQ files?
5 weeks ago by Brian Bushnell 20k
1
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1
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463
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Comment: Comment: Tools for reference-guided de novo assembly of bacterial genome
5 weeks ago by Brian Bushnell 20k
1
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2
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1.3k
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Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
5 weeks ago by Brian Bushnell 20k
1
vote
1
reply
1.3k
views
Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
6 weeks ago by Brian Bushnell 20k
1
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1
reply
463
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Answer: Answer: Tools for reference-guided de novo assembly of bacterial genome
6 weeks ago by Brian Bushnell 20k
3
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1
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359
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Answer: Answer: Exception in thread "main" java.lang.RuntimeException: Sequence and quality leng
6 weeks ago by Brian Bushnell 20k
1
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1
reply
961
views
Comment: Comment: What is the best way to compute genetic distances between FASTQ files?
6 weeks ago by Brian Bushnell 20k
1
vote
0
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961
views
Comment: Comment: What is the best way to compute genetic distances between FASTQ files?
6 weeks ago by Brian Bushnell 20k
3
votes
1
reply
961
views
Answer: Answer: What is the best way to compute genetic distances between FASTQ files?
6 weeks ago by Brian Bushnell 20k
0
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0
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605
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Comment: Comment: Aligner with statistics included?
6 weeks ago by Brian Bushnell 20k
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0
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339
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Comment: Comment: Complexity curve for PE fastq files
6 weeks ago by Brian Bushnell 20k
1
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0
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348
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Answer: Answer: Small RNA sequencing using Illumina 2 channel SBS: how to deal with Gs?
6 weeks ago by Brian Bushnell 20k
1
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1
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339
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Answer: Answer: Complexity curve for PE fastq files
6 weeks ago by Brian Bushnell 20k
3
votes
1
reply
861
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Comment: Comment: NGS one-liner to call variants
6 weeks ago by Brian Bushnell 20k
2
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1
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441
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Answer: Answer: What are unbinned contigs ?
7 weeks ago by Brian Bushnell 20k
1
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0
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648
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Comment: Comment: BBtools callvariants.sh
7 weeks ago by Brian Bushnell 20k
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2
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648
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Answer: Answer: BBtools callvariants.sh
7 weeks ago by Brian Bushnell 20k
0
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0
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1.2k
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Answer: Answer: How to discard alignments from SAM/BAM file that have mismatches
7 weeks ago by Brian Bushnell 20k
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0
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1.4k
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Comment: Comment: Simulate reads for positions in a vcf file
7 weeks ago by Brian Bushnell 20k
1
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0
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636
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Answer: Answer: Repeat detection/masking in bacteria
7 weeks ago by Brian Bushnell 20k
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0
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1.1k
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Comment: Comment: GATK memory error with Java
7 weeks ago by Brian Bushnell 20k
0
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0
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584
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Answer: Answer: Deduplication
7 weeks ago by Brian Bushnell 20k
0
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0
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1.3k
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Answer: Answer: Aligning very short sequences using bowtie2, I need fine control over how many m
7 weeks ago by Brian Bushnell 20k
1
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0
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579
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Answer: Answer: Mitochondrial contig identification in fungal genome assemblies
7 weeks ago by Brian Bushnell 20k
0
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0
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1.1k
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Comment: Comment: Check Strandedness
7 weeks ago by Brian Bushnell 20k
0
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0
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460
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Comment: Comment: Allele numbers and frequencies in X and Y chr?
7 weeks ago by Brian Bushnell 20k
1
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1
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495
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Comment: Comment: Viral positive and negative strand with paired sequencing and bowtie
7 weeks ago by Brian Bushnell 20k
0
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0
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310
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Answer: Answer: Partition reads in BAM file by MAG
7 weeks ago by Brian Bushnell 20k
1
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0
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1.1k
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Answer: Answer: Can BWA (mem) detect longer deletions?
7 weeks ago by Brian Bushnell 20k
1
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0
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286
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Comment: Comment: Reducing BWA mem seed length when a genome is highly heterozygous?
7 weeks ago by Brian Bushnell 20k
2,029 results • Page 2 of 41
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