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Comment: Comment: AVX error with Deepvariant caller
5 months ago by Brian Bushnell 20k
0
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0
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589
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Comment: Comment: Regarding using a "pseudo reference genome" for aligning short reads
5 months ago by Brian Bushnell 20k
0
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1
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535
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Comment: Comment: Jellyfish problem with Failed to open input file 'reads.jf'
5 months ago by Brian Bushnell 20k
2
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1
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1.7k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
5 months ago by Brian Bushnell 20k
1
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0
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1.7k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
5 months ago by Brian Bushnell 20k
1
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2
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1.7k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
5 months ago by Brian Bushnell 20k
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0
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576
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Answer: Answer: Novaseq read coverage needed for demultiplexing
5 months ago by Brian Bushnell 20k
0
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1
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1.5k
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Comment: Comment: Poly-A trimming for WGBS
5 months ago by Brian Bushnell 20k
1
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0
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1.7k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
5 months ago by Brian Bushnell 20k
1
vote
1
reply
1.7k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
5 months ago by Brian Bushnell 20k
2
votes
0
replies
1.7k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
5 months ago by Brian Bushnell 20k
0
votes
1
reply
1.7k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
5 months ago by Brian Bushnell 20k
1
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0
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1.9k
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Answer: Answer: BaseRecalibrator takes forever to run. Any suggestions?
5 months ago by Brian Bushnell 20k
0
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1
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514
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Comment: Comment: Query regarding callsets used as known sites in Variant Calling
5 months ago by Brian Bushnell 20k
4
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3
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1.7k
views
Answer: Answer: Bbtools callvariant multisample mode, + base recalibration
5 months ago by Brian Bushnell 20k
0
votes
1
reply
1.5k
views
Comment: Comment: Poly-A trimming for WGBS
5 months ago by Brian Bushnell 20k
0
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0
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543
views
Comment: Comment: Conceptual question about open reading frames
5 months ago by Brian Bushnell 20k
0
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0
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409
views
Answer: Answer: Trimming pair end fastq files merged not interleaved
5 months ago by Brian Bushnell 20k
0
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1
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1.5k
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Answer: Answer: Poly-A trimming for WGBS
5 months ago by Brian Bushnell 20k
0
votes
1
reply
514
views
Comment: Comment: Query regarding callsets used as known sites in Variant Calling
5 months ago by Brian Bushnell 20k
1
vote
0
replies
581
views
Comment: Comment: salmon for gene expression quantification
5 months ago by Brian Bushnell 20k
0
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0
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698
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Comment: Comment: Quality filtering prior to pseudoalignment
5 months ago by Brian Bushnell 20k
1
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1
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1.3k
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Comment: Comment: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
5 months ago by Brian Bushnell 20k
0
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0
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396
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Answer: Answer: how to create a consensus sequence from different assemblies
5 months ago by Brian Bushnell 20k
2
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0
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1.3k
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Comment: Comment: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
5 months ago by Brian Bushnell 20k
2
votes
2
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1.3k
views
Answer: Answer: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
5 months ago by Brian Bushnell 20k
1
vote
1
reply
543
views
Answer: Answer: Conceptual question about open reading frames
5 months ago by Brian Bushnell 20k
1
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0
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456
views
Answer: Answer: Do threads matter for host DNA removal with bbmap?
5 months ago by Brian Bushnell 20k
0
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0
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862
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Comment: Comment: Can clumpify.sh be used in a streaming fashion downstream of bcl-convert
5 months ago by Brian Bushnell 20k
0
votes
0
replies
852
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Answer: Answer: Detect contaminating organism
5 months ago by Brian Bushnell 20k
2
votes
2
replies
1.9k
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Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
5 months ago by Brian Bushnell 20k
1
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0
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1.7k
views
Comment: Comment: How do I know how much memory to use when piping to with BBMap suite (OutOfMemor
5 months ago by Brian Bushnell 20k
1
vote
1
reply
854
views
Answer: Answer: RNA-Seq with DNA contamination, any way to salvage the data?
5 months ago by Brian Bushnell 20k
1
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2
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862
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Comment: Comment: Can clumpify.sh be used in a streaming fashion downstream of bcl-convert
5 months ago by Brian Bushnell 20k
1
vote
0
replies
909
views
Comment: Comment: Command line or python RNA-seq read simulator
5 months ago by Brian Bushnell 20k
1
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1
reply
1.9k
views
Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
5 months ago by Brian Bushnell 20k
2
votes
1
reply
7.7k
views
Answer: Answer: Randomize Read Order In Multigbp Fastq File?
6 months ago by Brian Bushnell 20k
0
votes
1
reply
635
views
Comment: Comment: trimming primers using iVar
6 months ago by Brian Bushnell 20k
1
vote
0
replies
698
views
Comment: Comment: Best way to use k-mers as a predictor in my neural network
6 months ago by Brian Bushnell 20k
1
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1
reply
1.4k
views
Comment: Comment: What is the best way to compute genetic distances between FASTQ files?
6 months ago by Brian Bushnell 20k
1
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1
reply
1.0k
views
Comment: Comment: Tools for reference-guided de novo assembly of bacterial genome
6 months ago by Brian Bushnell 20k
1
vote
2
replies
1.9k
views
Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
6 months ago by Brian Bushnell 20k
1
vote
1
reply
1.9k
views
Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
6 months ago by Brian Bushnell 20k
2
votes
1
reply
1.0k
views
Answer: Answer: Tools for reference-guided de novo assembly of bacterial genome
6 months ago by Brian Bushnell 20k
3
votes
1
reply
576
views
Answer: Answer: Exception in thread "main" java.lang.RuntimeException: Sequence and quality leng
6 months ago by Brian Bushnell 20k
1
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1
reply
1.4k
views
Comment: Comment: What is the best way to compute genetic distances between FASTQ files?
6 months ago by Brian Bushnell 20k
1
vote
0
replies
1.4k
views
Comment: Comment: What is the best way to compute genetic distances between FASTQ files?
6 months ago by Brian Bushnell 20k
3
votes
1
reply
1.4k
views
Answer: Answer: What is the best way to compute genetic distances between FASTQ files?
6 months ago by Brian Bushnell 20k
0
votes
0
replies
1.0k
views
Comment: Comment: Aligner with statistics included?
6 months ago by Brian Bushnell 20k
0
votes
0
replies
506
views
Comment: Comment: Complexity curve for PE fastq files
6 months ago by Brian Bushnell 20k
2,048 results • Page 2 of 41
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