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1
vote
0
replies
1.5k
views
Answer:
Answer: Which alignment for whole bacterial genomes for phylogenetic tree?
5 months ago by
michael.ante
★ 3.8k
0
votes
0
replies
604
views
Comment:
Comment: HTseq no features
12 months ago by
michael.ante
★ 3.8k
1
vote
0
replies
934
views
Comment:
Comment: RNA seq for different tissues samples
16 months ago by
michael.ante
★ 3.8k
0
votes
1
reply
795
views
Comment:
Comment: finding overlapping motifs to increase length of motif
16 months ago by
michael.ante
★ 3.8k
0
votes
0
replies
415
views
Comment:
Comment: Quantify gene expression using flanking sequences
18 months ago by
michael.ante
★ 3.8k
1
vote
0
replies
2.1k
views
Comment:
Comment: Searching for mRNA ending with a specific 3' pattern in NON-poly-A RNASeq data.
2.5 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
2.1k
views
Comment:
C: How to extract sequences from multiple fastq files based on part of the header?
3.1 years ago by
michael.ante
★ 3.8k
1
vote
0
replies
757
views
Comment:
C: How to interpret one region of gene with much higher RNASeq coverage than other
3.1 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
1.5k
views
Comment:
C: How to identify 3'UTR region?
4.1 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
1.6k
views
Comment:
C: featureCounts log: "WARNING contig is not found in the provided genome file!"
4.2 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
2.5k
views
Answer:
A: How to interpret the differences of read counts using htseq and feature counts?
4.2 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
1.1k
views
Comment:
C: Would curated pathway gene set better being weighted than being binary
4.2 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
1.1k
views
Comment:
C: Would curated pathway gene set better being weighted than being binary
4.2 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
1.8k
views
Comment:
C: Extract sequences from fastA files based on csv chart in R
4.3 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
1.8k
views
Comment:
C: Extract sequences from fastA files based on csv chart
4.3 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
1.6k
views
Comment:
C: Error in piRNA gtf file while featurecounts step in STAR aligner?
4.3 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
1.5k
views
Comment:
C: STAR error (segmentation fault) in Aligning reads
4.3 years ago by
michael.ante
★ 3.8k
0
votes
2
replies
2.0k
views
Comment:
C: FASTQ exctract ID's
4.3 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
1.5k
views
Comment:
C: STAR error (segmentation fault) in Aligning reads
4.3 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
1.6k
views
Answer:
A: Error in piRNA gtf file while featurecounts step in STAR aligner?
4.3 years ago by
michael.ante
★ 3.8k
2
votes
1
reply
948
views
Answer:
C: Scaleable trimming of GenBank sequences?
4.3 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
975
views
Comment:
C: Data set containing corresponding RNA-seq and RT-Qpcr data
4.3 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
1.5k
views
Answer:
A: Transcription factor target gene
4.3 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
2.8k
views
Comment:
C: bash loop to count variants using vcftools
updated 4.3 years ago by
Ram
43k • written 8.3 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
2.0k
views
Comment:
C: RNA-SeQC v1.1.8 transcript_id attribute was not found
4.3 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
2.6k
views
Answer:
A: two questions in loading data
updated 4.3 years ago by
Ram
43k • written 8.4 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
2.3k
views
Answer:
A: Tophat, low alignement left read
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
michael.ante
★ 3.8k
2
votes
1
reply
2.0k
views
Answer:
A: Joining two files with multiple columns
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
michael.ante
★ 3.8k
1
vote
0
replies
6.4k
views
Comment:
C: How to confirm forward primer matches each read without removing primer sequence
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
michael.ante
★ 3.8k
2
votes
1
reply
31k
views
Comment:
C: getting intersect between two lists of genes in R
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
31k
views
Comment:
C: getting intersect between two lists of genes in R
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
31k
views
Comment:
C: getting intersect between two lists of genes in R
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
4.0k
views
Comment:
C: Annotating RNA-Seq exon junctions
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
michael.ante
★ 3.8k
3
votes
1
reply
4.4k
views
Comment:
C: Merge 2 files based on rs number but keep all info only from the first file
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
michael.ante
★ 3.8k
9
votes
1
reply
2.8k
views
Answer:
A: Can FPKM be added?
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
michael.ante
★ 3.8k
3
votes
1
reply
1.9k
views
Answer:
C: awk, copy and paste single line command
updated 4.4 years ago by
Kevin Blighe
87k • written 4.4 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
2.2k
views
Comment:
C: Nothing will align with HTSeq?
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
michael.ante
★ 3.8k
3
votes
1
reply
3.0k
views
Answer:
A: error in getting sorted bam
updated 4.4 years ago by
Ram
43k • written 8.6 years ago by
michael.ante
★ 3.8k
2
votes
1
reply
6.4k
views
Comment:
C: Using featureCount with a GFF file
4.4 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
6.4k
views
Comment:
C: Using featureCount with a GFF file
4.4 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
7.2k
views
Comment:
C: Removing barcode and adapters?
updated 4.4 years ago by
Ram
43k • written 8.7 years ago by
michael.ante
★ 3.8k
14
votes
5
replies
31k
views
Answer:
A: Converstion of BED with scores into bigWig
updated 4.4 years ago by
Ram
43k • written 8.7 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
7.6k
views
Comment:
C: Bedtools problem : It looks as though you have less than 3 columns at line: 1.
4.4 years ago by
michael.ante
★ 3.8k
1
vote
0
replies
3.8k
views
Comment:
C: salmon was only able to assign 0 fragments to transcripts
4.4 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
1.9k
views
Comment:
C: awk, copy and paste single line command
4.4 years ago by
michael.ante
★ 3.8k
1
vote
0
replies
3.1k
views
Comment:
C: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
4.4 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
3.1k
views
Comment:
A: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
4.4 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
1.2k
views
Answer:
A: Interpret genome alignment results
4.4 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
1.5k
views
Comment:
C: Are reads with the same length and position always "duplicates"
4.5 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
1.6k
views
Comment:
C: can I use soft-clip RNA-seq reads to summarize gene counts?
4.5 years ago by
michael.ante
★ 3.8k
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