User: Mahantesh Biradar
Mahantesh Biradar • 30
- Reputation:
- 30
- Status:
- New User
- Location:
- Taipei, Taiwan
- Website:
- https://www.mahanteshb...
- Twitter:
- Mahantesh19_
- Last seen:
- 9 months ago
- Joined:
- 4 years, 1 month ago
- Email:
- m******************@gmail.com
I'm a Graduate PhD researcher in Biomedical Science (Public Health | Epidemiology| Bioinformatics) & passionate for Social Media Strategy | Biz Dev
Posts by Mahantesh Biradar
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... Apologize me if its a silly query
Hi friends
I'm trying to generate a risk score (weighted by the beta of each SNP) using a set of 28 SNPs and my model looks like this
--adjust
--bfile project
--covar pheno_file
--covar-name Gender, Age,PC1,PC2,PC3
--linear
--out file
--pheno pheno_file
--pheno- ...
written 10 months ago by
Mahantesh Biradar • 30
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... Hi Everyone! I'm doing a GWAS analysis for SNP. I'm using plink --file mydata --covar c.txt --covar-name AGE,BMI-SMOKE,ALC.
But I'm getting this error: Failed to open [Covariate.txt].
Any suggestions? I have checked the file name and its spelled correctly! ...
written 2.3 years ago by
Mahantesh Biradar • 30
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... How to handle pleiotropic effect in Mendelian randomization study? I'm using the SNP/Genetic Score as an instrumental variable. I'm wondering what are the potential ways to correct for pleiotropic effect ...
written 2.6 years ago by
Mahantesh Biradar • 30
2
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1.2k
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1
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... I have genotype values like AA GG CC etc - How can I convert these values into 0, 1, 2? I'm using SAS to process my data. ...
written 2.7 years ago by
Mahantesh Biradar • 30
• updated
2.7 years ago by
piet • 1.6k
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2.4k
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... I have a SNP data which looks like
SNP A SNP B SNP C
AA GG CC
AC CG GC
etc
How can I calculate the Genetic risk score based on Minor/risk allele. I'm currently using SAS to process my data. ...
written 2.7 years ago by
Mahantesh Biradar • 30
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808
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... How can I check the distribution of genotypes and alleles in two groups using SAS? ...
written 2.8 years ago by
Mahantesh Biradar • 30
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... I have the following error when I'm trying to install the Haploview. I also download and installed the Java Runtime and Java platform JDK. But I still have the same error. Kindly let me know how to resolve this?
Error: The install4j wizard could not find a JAVA RUNTIME Enviornment on your system. P ...
written 3.0 years ago by
Mahantesh Biradar • 30
• updated
2.6 years ago by
Biostar ♦♦ 20
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... I would like to download the list all SNPs for a gene of my interest with all their details like Chromosome, Physical position etc. How can I do this? ...
written 3.0 years ago by
Mahantesh Biradar • 30
• updated
3.0 years ago by
Ibrahim Tanyalcin • 930
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... I have a whole genome SNP data for few hundred patients stored in SAS datasets and I would like to know, How I can filter certain specific SNPs using the rs ids?
The genotyping was performed on Axiom Genomewide array. I have PIDs as observations and S1, S2.... in the columns! ...
written 3.0 years ago by
Mahantesh Biradar • 30
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542
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... Data type: Longitudinal
Observations: Multiple observations for one patient id (for repeated hospital visit)
Each observation has START and END date of treatment
Que: How to find the DURATION of the treatment for each patient based on multiple observations using SATRT and END date of the treatmen ...
written 3.4 years ago by
Mahantesh Biradar • 30
Latest awards to Mahantesh Biradar
Popular Question
2.2 years ago,
created a question with more than 1,000 views.
For CNV data analysis using PLINK
Popular Question
2.2 years ago,
created a question with more than 1,000 views.
For How to calculate the genetic risk score?
Popular Question
2.2 years ago,
created a question with more than 1,000 views.
For How to convert .txt file to .MAP file for CNV data analysis using PLINK?
Popular Question
3.0 years ago,
created a question with more than 1,000 views.
For How to convert .txt file to .MAP file for CNV data analysis using PLINK?
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