User: Mahan

gravatar for Mahan
Mahan70
Reputation:
70
Status:
Trusted
Location:
Taipei, Taiwan
Website:
https://www.mahanteshb...
Twitter:
Mahantesh19_
Last seen:
2 days, 23 hours ago
Joined:
5 years, 8 months ago
Email:
m******************@gmail.com

Epidemiology | Project Manager | Social Media Strategy | Digital Marketing | Hiker

Posts by Mahan

<prev • 25 results • page 1 of 3 • next >
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Obtain gene names for the SNPs from GWAS result
... Is there any tool/package to obtain the gene names for the SNPs of my interest from a GWAS analysis? ...
gwas results association file gene names written 28 days ago by Mahan70
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Comment: A: Any suitable alternative for Haploview?
... Hi Kevin, thanks for your tips. Can you please point me a suitable page for this "For the beta, OR, p-value, et cetera, please use PLINK."? Thanks in advance ...
written 6 weeks ago by Mahan70
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Any suitable alternative for Haploview?
... Hello everyone, I used to use Haploview to analyze my GWAS results but recently I'm unable to use it because of some errors it throwing. I would like to know if there is any suitable alternative for Haploview which can help me to visualize my GWAS results and also look into SNPs by beta, OR, and p-v ...
gwas haploview alternative manhattan plot written 7 weeks ago by Mahan70
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Comment: A: How to handle pleiotropic effect in Mendelian randomization study?
... I think your 1st point is correct, secondly, the IV (SNP or GRS) should only affect the outcome through the exposure (not independent of exposure -> outcome pathway). For your 3rd point, I have seen some papers the authors check if the SNPs they choose are also associated with potential confounde ...
written 8 weeks ago by Mahan70
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Comment: A: How to handle pleiotropic effect in Mendelian randomization study?
... Hi Shicheng, There are three core assumptions for MR (24–26): 1. The genetic variant is associated with the exposure **2. The genetic variant is independent of the outcome given the exposure and all confounders (measured and unmeasured) of the exposure-outcome association** 3. The genetic varia ...
written 8 weeks ago by Mahan70
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Comment: C: Get rs ids using chromsome coordinates
... Thanks for your advice RamRS. Let me look into that. ...
written 10 weeks ago by Mahan70
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Comment: C: Get rs ids using chromsome coordinates
... Hi, RamRS ~ Thanks for your suggestion. Do you mind sharing the detailed steps and R code? ...
written 10 weeks ago by Mahan70
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Get rs ids using chromsome coordinates
... I have: CHR START END Effect_Allele Ref_Allele columns (hg38) I want: CHR START END Effect_Allele Ref_Allele RS_ID I would like to get the SNP rs id using chromosome coordinates, please let me know how I can do this? Thanks in Advance ...
rs id coordinates hg38 chromosome written 10 weeks ago by Mahan70 • updated 26 days ago by Biostar ♦♦ 20
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Comment: A: QC after imputation
... Hi Aurina, I'm also in a similar situation where I have received the imputed data (from IMPUTE) in the plink format (.bed, .bim, and .fam) for ch1 to ch22 individually. Can you please suggest me a suitable protocol/tool to perform the post imputation QC and association analysis. Thanks in advanc ...
written 4 months ago by Mahan70
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Comment: A: How To Analyze Imputed Gwas Data
... Hello everyone I have received the imputed data (from IMPUTE) divided into ch 1 to 22 (.bid, .bim, and .fam) files. In the next step, I would like to perform the post imputation QC and association analysis. I have experience working with a single file system earlier, but this is the first time ...
written 4 months ago by Mahan70

Latest awards to Mahan

Popular Question 16 days ago, created a question with more than 1,000 views. For How can I check the distribution of genotypes and alleles in two groups using SAS?
Popular Question 2.3 years ago, created a question with more than 1,000 views. For How can I check the distribution of genotypes and alleles in two groups using SAS?
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Java error while installing Haploview
Popular Question 2.3 years ago, created a question with more than 1,000 views. For How to filter the specific SNPs from whole genome data (SAS datasets)?
Popular Question 2.3 years ago, created a question with more than 1,000 views. For How to filter the important SNPs for a Pharmacogenetics study?
Popular Question 2.3 years ago, created a question with more than 1,000 views. For CNV data analysis using PLINK
Popular Question 2.3 years ago, created a question with more than 1,000 views. For How to convert genotypes values to numerical?
Popular Question 3.8 years ago, created a question with more than 1,000 views. For CNV data analysis using PLINK
Popular Question 3.8 years ago, created a question with more than 1,000 views. For How to calculate the genetic risk score?
Popular Question 3.8 years ago, created a question with more than 1,000 views. For How to convert .txt file to .MAP file for CNV data analysis using PLINK?
Popular Question 4.6 years ago, created a question with more than 1,000 views. For How to convert .txt file to .MAP file for CNV data analysis using PLINK?
Autobiographer 4.6 years ago, has more than 80 characters in the information field of the user's profile.

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