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299
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Getting nan values for bC bC_se bC_pval in mtCOJO results
mtCOJO
updated 9 months ago by 43k • written 9 months ago by ▴ 70
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0
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579
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Comment: Comment: Find gene regions (START and END) using gene IDs
9 months ago by Mahan ▴ 70
2
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3
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579
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Find gene regions (START and END) using gene IDs
gene GRCh37
9 months ago by Mahan ▴ 70
0
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0
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338
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How to extract a particular SNP allele counts from a .bgen file?
extract SNP bgen
17 months ago by Mahan ▴ 70
0
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1
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629
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How to obtain SNP rs ids using CHR:POS_A1_A2 format?
rs id BP SNP
updated 17 months ago by 161k • written 17 months ago by ▴ 70
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0
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1.2k
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Comment: Comment: What is the best way to read PLINK .raw format files into R?
18 months ago by Mahan ▴ 70
1
vote
1
reply
965
views
How can I convert plink (.bed, .fam and .bim) fileset to .pgen file format?
pgan plink bed
updated 13 months ago by 43k • written 18 months ago by ▴ 70
4
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2
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1.2k
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What is the best way to read PLINK .raw format files into R?
.raw plink R format
18 months ago by Mahan ▴ 70
1
vote
2
replies
630
views
How to perform elastic net using lassosum?
lasso net elastic lassosum
18 months ago by Mahan ▴ 70
0
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0
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630
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Comment: Comment: How to perform elastic net using lassosum?
18 months ago by Mahan ▴ 70
0
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0
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401
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How to find the SNPs used in final best.pgs in lassosum?
lassoum lasso SNPs
updated 18 months ago by 6.2k • written 18 months ago by ▴ 70
0
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0
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394
views
Error in parse.pheno.covar(pheno = pheno, covar = covar, parsed = parsed.test, : length(pheno) == parsed$n is not TRUE
lassosum prs pheno
updated 11 months ago by 43k • written 18 months ago by ▴ 70
0
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0
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476
views
How can I calculate EAF using freq_cases and freq_controls (effect allele freq in case and controls)
EAF freq_cases freq_controls allele Effect frequency
21 months ago by Mahan ▴ 70
0
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0
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266
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Obtain FREQ column for a summary statistics
Statistic Summary Freq MAF
22 months ago by Mahan ▴ 70
0
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0
replies
295
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Get MAF using the rs is from european reference panel
SNP id frequency allele MAF Minor rs
2.1 years ago by Mahan ▴ 70
0
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0
replies
3.9k
views
Comment: Comment: How to search dbSNP using a list of SNPs and retrieve Gene name (hgnc symbol if
2.3 years ago by Mahan ▴ 70
0
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1
reply
3.9k
views
Comment: Comment: How to search dbSNP using a list of SNPs and retrieve Gene name (hgnc symbol if
updated 2.3 years ago by 141k • written 2.3 years ago by ▴ 70
1
vote
1
reply
544
views
How to classify the SNPs/gene loci as reported or novel?
Analysis loci novel Meta SNPs gene reported
updated 2.4 years ago by ▴ 500 • written 2.4 years ago by ▴ 70
0
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2
replies
5.5k
views
Comment: Comment: SNP rs ID batch query
2.5 years ago by Mahan ▴ 70
0
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0
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1.2k
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Comment: Comment: Get the CHR number and POS using rs id
2.5 years ago by Mahan ▴ 70
0
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4
replies
1.2k
views
Get the CHR number and POS using rs id
SNP id rs Chromosome
2.5 years ago by Mahan ▴ 70
0
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1
reply
3.9k
views
Comment: Comment: How to search dbSNP using a list of SNPs and retrieve Gene name (hgnc symbol if
2.7 years ago by Mahan ▴ 70
0
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1
reply
3.9k
views
Comment: Comment: How to search dbSNP using a list of SNPs and retrieve Gene name (hgnc symbol if
2.7 years ago by Mahan ▴ 70
3
votes
5
replies
1.1k
views
Get rs ids using chromsome coordinates
rs id Chromosome Coordinates Hg38
updated 3.6 years ago by 20 • written 3.7 years ago by ▴ 70
1
vote
1
reply
811
views
Obtain gene names for the SNPs from GWAS result
GWAS Results Association File Gene names
3.6 years ago by Mahan ▴ 70
4
votes
3
replies
1.9k
views
Any suitable alternative for Haploview?
Haploview Alternative GWAS Manhattan Plot
3.6 years ago by Mahan ▴ 70
0
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1
reply
1.9k
views
Comment: A: Any suitable alternative for Haploview?
3.6 years ago by Mahan ▴ 70
0
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0
replies
1.1k
views
Comment: C: Get rs ids using chromsome coordinates
3.7 years ago by Mahan ▴ 70
0
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1
reply
1.1k
views
Comment: C: Get rs ids using chromsome coordinates
3.7 years ago by Mahan ▴ 70
1
vote
1
reply
3.3k
views
Java error while installing Haploview
Java Error Haploview Installation
updated 3.8 years ago by 11k • written 8.0 years ago by ▴ 70
0
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0
replies
4.3k
views
How to calculate the genetic risk score?
Genetic Risk Score RiskScore SAS
updated 3.8 years ago by 11k • written 7.8 years ago by ▴ 70
0
votes
0
replies
1.8k
views
Error: Failed to open [Covariate File]
GWAS PLINK SNP
updated 13 months ago by 43k • written 7.4 years ago by ▴ 70
0
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2
replies
3.7k
views
Comment: A: QC after imputation
3.8 years ago by Mahan ▴ 70
0
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0
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43k
views
Comment: A: How To Analyze Imputed Gwas Data
3.8 years ago by Mahan ▴ 70
0
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1
reply
2.1k
views
Help needed for Interaction analysis (linear regression)
Regression PLINK Interaction
5.9 years ago by Mahan ▴ 70
2
votes
3
replies
2.5k
views
How to convert genotypes values to numerical?
SNP Genotype Numeric
updated 7.8 years ago by ★ 1.8k • written 7.8 years ago by ▴ 70
0
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0
replies
1.8k
views
How can I check the distribution of genotypes and alleles in two groups using SAS?
Genotype Allele Frequency SAS
7.9 years ago by Mahan ▴ 70
8
votes
6
replies
5.3k
views
How can I get a list of all SNPs from a gene of my interest?
SNP Gene NCBI HapMap
updated 8.1 years ago by ★ 1.2k • written 8.1 years ago by ▴ 70
0
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0
replies
1.7k
views
How to filter the specific SNPs from whole genome data (SAS datasets)?
SNP Whole Genome SNP data
8.1 years ago by Mahan ▴ 70
1
vote
1
reply
1.7k
views
How to filter the important SNPs for a Pharmacogenetics study?
SNP Genotyping Pharmacogenetics
8.5 years ago by Mahan ▴ 70
1
vote
4
replies
5.1k
views
How to convert .txt file to .MAP file for CNV data analysis using PLINK?
MAP PLINK CNV
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 70
0
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0
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5.1k
views
Answer: Answer: How to convert .txt file to .MAP file for CNV data analysis using PLINK?
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 70
0
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1
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5.1k
views
Comment: Comment: How to convert .txt file to .MAP file for CNV data analysis using PLINK?
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 70
0
votes
0
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2.6k
views
CNV data analysis using PLINK
GWAS PLINK CNV
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 70
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