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Answer: A: Retrotransposon analysis on ChIP-seq data.
updated 4.5 years ago by 43k • written 8.9 years ago by ▴ 480
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Answer: A: Macs2 callpeak error: IndexError: list index out of range
7.4 years ago by Gary ▴ 480
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Answer: A: a question about some "basic numbers" for rna-seq experiments
8.8 years ago by Gary ▴ 480
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Answer: A: Functional Annotation of Tomato Transcriptome
8.8 years ago by Gary ▴ 480
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Answer: Answer: What's the best way to find all the possible cutting sites of an sequence-specif
updated 16 months ago by 43k • written 8.8 years ago by ▴ 480
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Answer: A: ChIP-Seq contaminated by human tissue?
8.8 years ago by Gary ▴ 480
11
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9.2k
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Answer: Answer: How is FDR calculated in MACS?
updated 16 months ago by 43k • written 8.9 years ago by ▴ 480
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4.8k
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Answer: Answer: Reason for low mapping rate for murine RNA-seq data with splice-aware aligner?
updated 16 months ago by 43k • written 8.9 years ago by ▴ 480
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Answer: Answer: Differential expression without technical replicates
updated 16 months ago by 43k • written 8.9 years ago by ▴ 480
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2.9k
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Answer: A: Unexpected RNASeq result in shRNA experiment
9.0 years ago by Gary ▴ 480
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Answer: Answer: 48 Replicate RNA-Seq Study Points to Replicates Needed for DGE
updated 15 months ago by 43k • written 9.0 years ago by ▴ 480
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Answer: Answer: Chip-Seq - Peak caller for broad enrichment of histone modifications?
updated 22 months ago by 43k • written 9.1 years ago by ▴ 480
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Answer: A: 200 vs 400 bp Ion Torrent
9.1 years ago by Gary ▴ 480
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Answer: Answer: Peak Calling with MACS (treat and control samples)
updated 22 months ago by 43k • written 9.1 years ago by ▴ 480
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Answer: A: relationship between coverage and expression level in RNAseq
9.1 years ago by Gary ▴ 480
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Answer: Answer: remove over-represented sequences
updated 22 months ago by 43k • written 9.1 years ago by ▴ 480
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Answer: Answer: How many poor quality bases define a bad read (using fastx or equivalent)?
updated 22 months ago by 43k • written 9.1 years ago by ▴ 480
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Answer: A: Network analysis software
9.1 years ago by Gary ▴ 480
2
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Answer: Answer: RNA seq time course data experiment design
updated 23 months ago by 43k • written 9.1 years ago by ▴ 480
2
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7.4k
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Answer: A: Top MACS peaks from ChIP-seq look identical to input
9.1 years ago by Gary ▴ 480
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4.8k
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Answer: Answer: Integrating HTSeq count data of different samples
updated 23 months ago by 43k • written 9.1 years ago by ▴ 480
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