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Comment: Comment: Why the bed file not recognized as a bed file
3.4 years ago by i.sudbery 22k
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3.2k
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Comment: Comment: Cannot differentiate between groups with heatmap
3.4 years ago by i.sudbery 22k
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Answer: Answer: Cellular deconvolution does not work without batch effect correction
3.5 years ago by i.sudbery 22k
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7.4k
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Comment: Comment: Salmon alignment based quantification
3.5 years ago by i.sudbery 22k
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1.2k
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Comment: Comment: Make DESEq2 consider all levels in reduced model
3.5 years ago by i.sudbery 22k
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985
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Answer: Answer: Study of similarity (contrary to differential expression analysis)
3.5 years ago by i.sudbery 22k
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1.2k
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Answer: Answer: Make DESEq2 consider all levels in reduced model
3.5 years ago by i.sudbery 22k
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7.4k
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Comment: Comment: Salmon alignment based quantification
3.5 years ago by i.sudbery 22k
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9.7k
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Comment: Comment: Sufficient Specs for a laptop to work in bioinformatics
3.5 years ago by i.sudbery 22k
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7.4k
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Answer: Answer: Salmon alignment based quantification
3.5 years ago by i.sudbery 22k
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4.5k
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Comment: Comment: Mate pairs and paired reads confusion
3.5 years ago by i.sudbery 22k
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9.7k
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Comment: Comment: Sufficient Specs for a laptop to work in bioinformatics
3.5 years ago by i.sudbery 22k
1
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1
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9.7k
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Comment: Comment: Sufficient Specs for a laptop to work in bioinformatics
3.5 years ago by i.sudbery 22k
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9.7k
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Answer: Answer: Sufficient Specs for a laptop to work in bioinformatics
3.5 years ago by i.sudbery 22k
0
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1
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4.5k
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Answer: Answer: Mate pairs and paired reads confusion
3.5 years ago by i.sudbery 22k
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0
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1.4k
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Comment: Comment: Single sample vs. a control group in limma
3.5 years ago by i.sudbery 22k
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1
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7.1k
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Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
3.5 years ago by i.sudbery 22k
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1
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1.4k
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Answer: Answer: Single sample vs. a control group in limma
3.5 years ago by i.sudbery 22k
1
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1
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7.1k
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Answer: Answer: Methodological problems are extremely common for enrichment analysis - beware th
3.5 years ago by i.sudbery 22k
1
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0
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7.1k
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Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
3.5 years ago by i.sudbery 22k
1
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0
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1.3k
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Answer: Answer: How can I make this type of images in R-studio or do you know any software to ma
3.6 years ago by i.sudbery 22k
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1.6k
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Comment: Comment: qPCR differential gene expression
3.6 years ago by i.sudbery 22k
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1
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3.1k
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Comment: Comment: miRNA nomenclature and how to handle miRNAs
3.7 years ago by i.sudbery 22k
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1
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3.1k
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Comment: Comment: miRNA nomenclature and how to handle miRNAs
3.7 years ago by i.sudbery 22k
2
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3.1k
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Answer: Answer: miRNA nomenclature and how to handle miRNAs
3.7 years ago by i.sudbery 22k
1
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1.1k
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Answer: Answer: Harvesting number of miRNA interaction for the whole genome using DIANA tools (o
3.7 years ago by i.sudbery 22k
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1
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1.6k
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Comment: Comment: qPCR differential gene expression
3.7 years ago by i.sudbery 22k
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1
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1.6k
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Answer: Answer: qPCR differential gene expression
3.7 years ago by i.sudbery 22k
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3.2k
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Comment: Comment: Cannot differentiate between groups with heatmap
3.7 years ago by i.sudbery 22k
2
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0
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3.2k
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Answer: Answer: Cannot differentiate between groups with heatmap
3.7 years ago by i.sudbery 22k
0
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21k
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Comment: Comment: log2 fold change in RNA-seq analysis
3.7 years ago by i.sudbery 22k
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1.7k
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Answer: Answer: H3K27Ac enrichment but NO ATAC seq peak
3.7 years ago by i.sudbery 22k
4
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1
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21k
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Answer: Answer: log2 fold change in RNA-seq analysis
3.7 years ago by i.sudbery 22k
1
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2.3k
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Comment: Comment: What Statistical Test should I use to compare count data (mutation gene count) u
3.7 years ago by i.sudbery 22k
4
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1
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2.3k
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Answer: Answer: What Statistical Test should I use to compare count data (mutation gene count) u
3.7 years ago by i.sudbery 22k
1
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1.5k
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Answer: Answer: Estimated gene counts with tximport
3.7 years ago by i.sudbery 22k
1
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2.1k
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Comment: Comment: DESeq2: "model matrix is not full rank"
3.8 years ago by i.sudbery 22k
1
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1
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2.1k
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Answer: Answer: DESeq2: "model matrix is not full rank"
3.8 years ago by i.sudbery 22k
1
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1.4k
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Answer: Answer: cfDNA ultra-deep sequencing with UMIs
3.8 years ago by i.sudbery 22k
2
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2.0k
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Answer: Answer: Help with STAR & stringTie pipeline
3.8 years ago by i.sudbery 22k
1
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3.2k
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Answer: Answer: UMI extraction from 10X visium spatial transcriptome data
3.8 years ago by i.sudbery 22k
1
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0
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1.8k
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Comment: Comment: Getting errors trying to run rmats
3.8 years ago by i.sudbery 22k
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2.3k
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Comment: Comment: De novo assembly of mRNA-seq has many transcripts binding to introns or genome p
3.8 years ago by i.sudbery 22k
1
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2
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2.3k
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Comment: Comment: De novo assembly of mRNA-seq has many transcripts binding to introns or genome p
3.8 years ago by i.sudbery 22k
0
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0
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1.9k
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Comment: Comment: Will Kallisto show a decrease in the TPM value if I have knocked out 2 of the 8
3.8 years ago by i.sudbery 22k
1
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1
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2.3k
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Answer: Answer: De novo assembly of mRNA-seq has many transcripts binding to introns or genome p
3.8 years ago by i.sudbery 22k
1
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1
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2.3k
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Answer: Answer: How to determine whether a gene is NOT expressed in a given cell population
3.8 years ago by i.sudbery 22k
3
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1
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1.9k
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Answer: Answer: Will Kallisto show a decrease in the TPM value if I have knocked out 2 of the 8
3.8 years ago by i.sudbery 22k
0
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0
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2.9k
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Comment: Comment: DESeq2 time-series analysis: Treat time variable as continuous or discrete?
3.8 years ago by i.sudbery 22k
0
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1
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2.6k
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Comment: Comment: How to replace/fill "Ns" in fasta with reference file having same coordinates
3.8 years ago by i.sudbery 22k
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