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Comment: Comment: Running salmon in alignment mode?
3.4 years ago by i.sudbery 22k
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935
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Comment: Comment: Evaluation of gene expression by the "2–∆∆Ct" method.
3.4 years ago by i.sudbery 22k
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959
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Answer: Answer: wgcna without clinical traits
3.5 years ago by i.sudbery 22k
2
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1.5k
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Answer: Answer: What are the best options for Isoform Switching Analysis in R?
3.5 years ago by i.sudbery 22k
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3.3k
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Comment: Comment: Kallisto and Salmon give different results
3.5 years ago by i.sudbery 22k
2
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1
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3.3k
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Answer: Answer: Kallisto and Salmon give different results
3.5 years ago by i.sudbery 22k
2
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919
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Answer: Answer: how to find coordinates of 5prime and 3prime utr from transcriptome data generat
3.5 years ago by i.sudbery 22k
3
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1.2k
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Answer: Answer: RNA-seq data, normality test, stat test
3.6 years ago by i.sudbery 22k
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0
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1.1k
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Comment: Comment: Correct model matrix design with R
3.6 years ago by i.sudbery 22k
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2.3k
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Comment: Comment: Why the bed file not recognized as a bed file
3.6 years ago by i.sudbery 22k
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1
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3.4k
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Comment: Comment: Cannot differentiate between groups with heatmap
3.6 years ago by i.sudbery 22k
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1
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1.9k
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Answer: Answer: Cellular deconvolution does not work without batch effect correction
3.7 years ago by i.sudbery 22k
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7.9k
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Comment: Comment: Salmon alignment based quantification
3.7 years ago by i.sudbery 22k
2
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1
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1.3k
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Comment: Comment: Make DESEq2 consider all levels in reduced model
3.7 years ago by i.sudbery 22k
2
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1
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1.1k
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Answer: Answer: Study of similarity (contrary to differential expression analysis)
3.7 years ago by i.sudbery 22k
1
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1
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1.3k
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Answer: Answer: Make DESEq2 consider all levels in reduced model
3.7 years ago by i.sudbery 22k
1
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1
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7.9k
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Comment: Comment: Salmon alignment based quantification
3.7 years ago by i.sudbery 22k
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11k
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Comment: Comment: Sufficient Specs for a laptop to work in bioinformatics
3.7 years ago by i.sudbery 22k
1
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1
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7.9k
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Answer: Answer: Salmon alignment based quantification
3.7 years ago by i.sudbery 22k
0
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1
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4.7k
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Comment: Comment: Mate pairs and paired reads confusion
3.7 years ago by i.sudbery 22k
1
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1
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11k
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Comment: Comment: Sufficient Specs for a laptop to work in bioinformatics
3.7 years ago by i.sudbery 22k
1
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1
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11k
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Comment: Comment: Sufficient Specs for a laptop to work in bioinformatics
3.7 years ago by i.sudbery 22k
3
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2
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11k
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Answer: Answer: Sufficient Specs for a laptop to work in bioinformatics
3.7 years ago by i.sudbery 22k
0
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1
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4.7k
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Answer: Answer: Mate pairs and paired reads confusion
3.7 years ago by i.sudbery 22k
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0
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1.5k
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Comment: Comment: Single sample vs. a control group in limma
3.7 years ago by i.sudbery 22k
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1
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7.5k
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Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
3.7 years ago by i.sudbery 22k
1
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1
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1.5k
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Answer: Answer: Single sample vs. a control group in limma
3.7 years ago by i.sudbery 22k
1
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1
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7.5k
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Answer: Answer: Methodological problems are extremely common for enrichment analysis - beware th
3.7 years ago by i.sudbery 22k
1
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0
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7.5k
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Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
3.7 years ago by i.sudbery 22k
1
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0
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1.4k
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Answer: Answer: How can I make this type of images in R-studio or do you know any software to ma
3.8 years ago by i.sudbery 22k
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0
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1.7k
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Comment: Comment: qPCR differential gene expression
3.8 years ago by i.sudbery 22k
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1
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3.6k
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Comment: Comment: miRNA nomenclature and how to handle miRNAs
3.8 years ago by i.sudbery 22k
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1
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3.6k
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Comment: Comment: miRNA nomenclature and how to handle miRNAs
3.8 years ago by i.sudbery 22k
2
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1
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3.6k
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Answer: Answer: miRNA nomenclature and how to handle miRNAs
3.8 years ago by i.sudbery 22k
1
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0
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1.2k
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Answer: Answer: Harvesting number of miRNA interaction for the whole genome using DIANA tools (o
3.8 years ago by i.sudbery 22k
0
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1
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1.7k
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Comment: Comment: qPCR differential gene expression
3.8 years ago by i.sudbery 22k
0
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1
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1.7k
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Answer: Answer: qPCR differential gene expression
3.8 years ago by i.sudbery 22k
0
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0
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3.4k
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Comment: Comment: Cannot differentiate between groups with heatmap
3.9 years ago by i.sudbery 22k
2
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0
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3.4k
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Answer: Answer: Cannot differentiate between groups with heatmap
3.9 years ago by i.sudbery 22k
0
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0
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22k
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Comment: Comment: log2 fold change in RNA-seq analysis
3.9 years ago by i.sudbery 22k
1
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0
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1.9k
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Answer: Answer: H3K27Ac enrichment but NO ATAC seq peak
3.9 years ago by i.sudbery 22k
4
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1
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22k
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Answer: Answer: log2 fold change in RNA-seq analysis
3.9 years ago by i.sudbery 22k
1
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0
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2.4k
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Comment: Comment: What Statistical Test should I use to compare count data (mutation gene count) u
3.9 years ago by i.sudbery 22k
4
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1
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2.4k
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Answer: Answer: What Statistical Test should I use to compare count data (mutation gene count) u
3.9 years ago by i.sudbery 22k
1
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0
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1.5k
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Answer: Answer: Estimated gene counts with tximport
3.9 years ago by i.sudbery 22k
1
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0
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2.2k
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Comment: Comment: DESeq2: "model matrix is not full rank"
3.9 years ago by i.sudbery 22k
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1
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2.2k
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Answer: Answer: DESeq2: "model matrix is not full rank"
3.9 years ago by i.sudbery 22k
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0
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1.5k
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Answer: Answer: cfDNA ultra-deep sequencing with UMIs
3.9 years ago by i.sudbery 22k
2
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0
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2.1k
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Answer: Answer: Help with STAR & stringTie pipeline
3.9 years ago by i.sudbery 22k
1
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0
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3.5k
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Answer: Answer: UMI extraction from 10X visium spatial transcriptome data
4.0 years ago by i.sudbery 22k
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