Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
2.7k
views
Answer: Answer: how to explain the sample size discrepancy in UCSC Xena
3 days ago by i.sudbery 22k
12
votes
1
reply
4.0k
views
Answer: Answer: Linear regression vs DESeq2 models for DEG analysis
3 days ago by i.sudbery 22k
0
votes
0
replies
5.2k
views
Comment: Comment: Help with Model
6 days ago by i.sudbery 22k
0
votes
1
reply
5.2k
views
Answer: Answer: Help with Model
7 days ago by i.sudbery 22k
0
votes
1
reply
7.7k
views
Comment: Comment: miRNA low mapping ratings
7 days ago by i.sudbery 22k
0
votes
1
reply
7.7k
views
Comment: Comment: miRNA low mapping ratings
7 days ago by i.sudbery 22k
0
votes
1
reply
7.7k
views
Comment: Comment: miRNA low mapping ratings
8 days ago by i.sudbery 22k
0
votes
1
reply
7.7k
views
Comment: Comment: miRNA low mapping ratings
8 days ago by i.sudbery 22k
0
votes
0
replies
7.4k
views
Comment: Comment: RNAseq requirements: Biological and Technical replicates
21 days ago by i.sudbery 22k
0
votes
0
replies
8.7k
views
Comment: Comment: High percentage of intronic/intergenic reads in RNA-seq
26 days ago by i.sudbery 22k
0
votes
0
replies
11k
views
Answer: Answer: FDR correction can sometimes lie to you!
6 weeks ago by i.sudbery 22k
0
votes
0
replies
650
views
Comment: Comment: UMI introduction and deduplication with SMARTer-Seq
8 weeks ago by i.sudbery 22k
6
votes
2
replies
1.3k
views
Answer: Answer: Does edgeR supports random effects?
9 weeks ago by i.sudbery 22k
1
vote
0
replies
634
views
Comment: Comment: Plotting of genes using tpm matrix
10 weeks ago by i.sudbery 22k
2
votes
1
reply
634
views
Comment: Comment: Plotting of genes using tpm matrix
11 weeks ago by i.sudbery 22k
0
votes
0
replies
460
views
Comment: Comment: Identification problem of IDE-8 cell on culture with inverted microscope
11 weeks ago by i.sudbery 22k
2
votes
1
reply
671
views
Comment: Comment: Understanding NCBI vs ENA data
11 weeks ago by i.sudbery 22k
0
votes
0
replies
716
views
Comment: Comment: Inherited pipeline uses RNA-seq variant calls for WASP filtering—shouldn’t it be
12 weeks ago by i.sudbery 22k
0
votes
1
reply
716
views
Answer: Answer: Inherited pipeline uses RNA-seq variant calls for WASP filtering—shouldn’t it be
12 weeks ago by i.sudbery 22k
0
votes
0
replies
738
views
Answer: Answer: RNA-seq: TPM batch effect correction
3 months ago by i.sudbery 22k
3
votes
0
replies
871
views
Comment: Comment: Can I use removeBatchEffect() before performing DEG analysis in bulk RNA-seq wit
3 months ago by i.sudbery 22k
2
votes
1
reply
855
views
Answer: Answer: DeSeq2 how to change design matrix when samples are exclusive: error in “Model m
updated 3 months ago by 89k • written 3 months ago by 22k
2
votes
1
reply
871
views
Comment: Comment: Can I use removeBatchEffect() before performing DEG analysis in bulk RNA-seq wit
3 months ago by i.sudbery 22k
0
votes
0
replies
613
views
Comment: Comment: Should matched samples (not paired) be included in the DESeq2 design model?
3 months ago by i.sudbery 22k
0
votes
1
reply
613
views
Answer: Answer: Should matched samples (not paired) be included in the DESeq2 design model?
3 months ago by i.sudbery 22k
4
votes
1
reply
761
views
Answer: Answer: Isoform analysis after quantification with Salmon/Star
3 months ago by i.sudbery 22k
2
votes
1
reply
883
views
Answer: Answer: pysam header and body
4 months ago by i.sudbery 22k
1
vote
0
replies
781
views
Comment: Comment: Both up- and down-regulated gene sets return the same GO pathway analysis result
4 months ago by i.sudbery 22k
2
votes
1
reply
781
views
Answer: Answer: Both up- and down-regulated gene sets return the same GO pathway analysis result
4 months ago by i.sudbery 22k
0
votes
1
reply
1.7k
views
Comment: Comment: Trim CDS to ORF
4 months ago by i.sudbery 22k
0
votes
1
reply
1.7k
views
Answer: Answer: Trim CDS to ORF
4 months ago by i.sudbery 22k
2
votes
1
reply
1.4k
views
Comment: Comment: RNASeq bulk transcriptomics analysis
4 months ago by i.sudbery 22k
0
votes
0
replies
190k
views
Comment: Comment: Fold change - a final explanation
4 months ago by i.sudbery 22k
1
vote
0
replies
1.0k
views
Answer: Answer: Pooling Replicates in Omics Analysis: Trade-off Between Cost and Data Robustness
4 months ago by i.sudbery 22k
0
votes
0
replies
962
views
Answer: Answer: miRNA alignment and count generation
5 months ago by i.sudbery 22k
2
votes
1
reply
1.2k
views
Comment: Comment: Methods for directional pathway analysis of DEGs?
5 months ago by i.sudbery 22k
1
vote
0
replies
487
views
Answer: Answer: Getting sequences fragments using pysam
5 months ago by i.sudbery 22k
1
vote
1
reply
692
views
Answer: Answer: MULTIQC for miRNAseq data
6 months ago by i.sudbery 22k
1
vote
0
replies
591
views
Answer: Answer: Tools for clustering genes rather than samples for bulk RNA-seq
6 months ago by i.sudbery 22k
0
votes
0
replies
2.3k
views
Comment: Comment: Reproducibility Crisis
6 months ago by i.sudbery 22k
2
votes
1
reply
2.3k
views
Comment: Comment: Reproducibility Crisis
6 months ago by i.sudbery 22k
3
votes
0
replies
2.3k
views
Answer: Answer: Reproducibility Crisis
6 months ago by i.sudbery 22k
1
vote
0
replies
1.1k
views
Comment: Comment: Absolute vs. differential gene expression - which analysis is more informative?
6 months ago by i.sudbery 22k
0
votes
1
reply
914
views
Answer: Answer: Using UMI-tools on Smart-seq3 RNA-Seq data
6 months ago by i.sudbery 22k
0
votes
1
reply
11k
views
Comment: Comment: Extract UMIs using UMI-tools
6 months ago by i.sudbery 22k
0
votes
0
replies
785
views
Answer: Answer: Higher number of reads mapped to transcriptome vs genome in star mapping
6 months ago by i.sudbery 22k
0
votes
0
replies
785
views
Comment: Comment: Higher number of reads mapped to transcriptome vs genome in star mapping
6 months ago by i.sudbery 22k
0
votes
1
reply
785
views
Comment: Comment: Higher number of reads mapped to transcriptome vs genome in star mapping
6 months ago by i.sudbery 22k
0
votes
0
replies
513
views
Answer: Answer: Co-expression analysis of miRNAs and target mRNAs
6 months ago by i.sudbery 22k
3
votes
0
replies
692
views
Answer: Answer: Why do RNAseq reads align to non-gene regions of the bacterial genome?
6 months ago by i.sudbery 22k
1,719 results • Page 1 of 35
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6