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422
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Comment: Comment: Transcript coverage 3' bias. Is it really that determining?
18 hours ago by i.sudbery 20k
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422
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Answer: Answer: Transcript coverage 3' bias. Is it really that determining?
1 day ago by i.sudbery 20k
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443
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Comment: Comment: Removing gDNA contamination from RNA seq data
1 day ago by i.sudbery 20k
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767
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Comment: Comment: What should I do if death cell counts and types biologically important in my sin
1 day ago by i.sudbery 20k
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867
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Comment: Comment: High Detection of Duplication in RNAseq dataset
1 day ago by i.sudbery 20k
2
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555
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Answer: Answer: Quantify miRNAs from whole transcriptome library (single end, TruSeq, 100bp)
1 day ago by i.sudbery 20k
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0
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555
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Comment: Comment: Quantify miRNAs from whole transcriptome library (single end, TruSeq, 100bp)
1 day ago by i.sudbery 20k
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173
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Answer: Answer: comparing STARsolo UMI-based directional deduplication vs umi-tools?
1 day ago by i.sudbery 20k
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406
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Answer: Answer: model interaction in DeSeq2 with >1K samples
5 days ago by i.sudbery 20k
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319
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Answer: Answer: How Can Pathway Analysis Methods Account for Genes with Different Activation Rol
6 days ago by i.sudbery 20k
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433
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Comment: Comment: Difficulties to assess bulk RNA-seq results
15 days ago by i.sudbery 20k
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1
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433
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Answer: Answer: Difficulties to assess bulk RNA-seq results
20 days ago by i.sudbery 20k
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432
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Answer: Answer: DESeq2: error in checkFullRank(modelMatrix)
21 days ago by i.sudbery 20k
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1
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704
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Comment: Comment: Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal
21 days ago by i.sudbery 20k
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1
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704
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Comment: Comment: Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal
22 days ago by i.sudbery 20k
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0
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704
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Comment: Comment: Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal
22 days ago by i.sudbery 20k
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384
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Comment: Comment: Biostatistics
updated 23 days ago by 44k • written 23 days ago by 20k
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326
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Comment: Comment: Rapid BaseQ drop in adaptor regions with UMI
4 weeks ago by i.sudbery 20k
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1
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326
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Comment: Comment: Rapid BaseQ drop in adaptor regions with UMI
4 weeks ago by i.sudbery 20k
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0
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567
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Comment: Comment: Combining two closely related bacterial annotated genomes to analyze as one pool
5 weeks ago by i.sudbery 20k
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1
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567
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Comment: Comment: Combining two closely related bacterial annotated genomes to analyze as one pool
5 weeks ago by i.sudbery 20k
3
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1
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1.5k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
5 weeks ago by i.sudbery 20k
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1
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1.5k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
5 weeks ago by i.sudbery 20k
6
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1
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1.5k
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Answer: Answer: dedup STAR transcriptome file using umi_tools
5 weeks ago by i.sudbery 20k
1
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0
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792
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Answer: Answer: What is a genomic range that would almost always get decent WGS coverage but is
6 weeks ago by i.sudbery 20k
1
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0
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304
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Answer: Answer: Using NumReads column of quants.genes.sf file to build DESeq2 input
6 weeks ago by i.sudbery 20k
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1
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822
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Comment: Comment: Question about edgeR p-values/FDR values
6 weeks ago by i.sudbery 20k
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2
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822
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Answer: Answer: Question about edgeR p-values/FDR values
6 weeks ago by i.sudbery 20k
0
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0
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439
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Comment: Comment: Has this sequence really more then 70k perfect matches in the human genome?
6 weeks ago by i.sudbery 20k
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1
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439
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Answer: Answer: Has this sequence really more then 70k perfect matches in the human genome?
6 weeks ago by i.sudbery 20k
0
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0
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294
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Comment: Comment: error in DESeq2 Determines differentially expressed features from count tables
7 weeks ago by i.sudbery 20k
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0
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717
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Comment: Comment: How the field has changed in the last 5 years, and 25 years (up to 2024)
7 weeks ago by i.sudbery 20k
8
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2
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717
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Answer: Answer: How the field has changes for the last 5 years, and 25 years (up to 2024)
7 weeks ago by i.sudbery 20k
4
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1
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743
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Answer: Answer: Why Are Transcripts Differentially Expressed but Not Genes in RNA-seq Analysis?
7 weeks ago by i.sudbery 20k
1
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1
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359
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Answer: Answer: Outlier after DEseq2 in meta-analysis
8 weeks ago by i.sudbery 20k
0
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0
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428
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Answer: Answer: Questions Regarding Normalization and Standardization in RNA-seq Differential An
8 weeks ago by i.sudbery 20k
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0
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1.7k
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Comment: Comment: UMItools dedup deduplication taking too much time + RAM
9 weeks ago by i.sudbery 20k
1
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1
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745
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Comment: Comment: Decision on Upregulated/Downregulated Genes in DE list- P-value and Log fold cha
9 weeks ago by i.sudbery 20k
2
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2
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745
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Answer: Answer: Decision on Upregulated/Downregulated Genes in DE list- P-value and Log fold cha
10 weeks ago by i.sudbery 20k
0
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0
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924
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Comment: Comment: The Evolution of NGS: What’s New and What’s Next?
10 weeks ago by i.sudbery 20k
3
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1
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924
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Answer: Answer: The Evolution of NGS: What’s New and What’s Next?
10 weeks ago by i.sudbery 20k
1
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0
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924
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Comment: Comment: The Evolution of NGS: What’s New and What’s Next?
10 weeks ago by i.sudbery 20k
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1
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337
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Answer: Answer: Significant p values with non significant looking figures
11 weeks ago by i.sudbery 20k
0
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0
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496
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Comment: Comment: RNASeq Analysis: data from different library
11 weeks ago by i.sudbery 20k
0
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1
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496
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Comment: Comment: RNASeq Analysis: data from different library
11 weeks ago by i.sudbery 20k
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1
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470
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Comment: Comment: Poor dispersion fit in DESeq2
11 weeks ago by i.sudbery 20k
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1
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470
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Comment: Comment: Dispersion fit - thoughts?
11 weeks ago by i.sudbery 20k
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0
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1.9k
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Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
11 weeks ago by i.sudbery 20k
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0
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1.9k
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Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
12 weeks ago by i.sudbery 20k
1
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0
replies
1.9k
views
Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
12 weeks ago by i.sudbery 20k
1,622 results • Page 1 of 33
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