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Comment: Comment: Low mapping rate with Salmon
18 hours ago by i.sudbery 19k
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394
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Comment: Comment: Marking duplicates using UMIs
1 day ago by i.sudbery 19k
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394
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Comment: Comment: Marking duplicates using UMIs
2 days ago by i.sudbery 19k
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225
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Answer: Answer: Trouble understanding seemingly contradicting results of GSE analysis (contradic
8 days ago by i.sudbery 19k
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1.1k
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Comment: Comment: How I know if it is a batch effect or are real differences between my controls a
14 days ago by i.sudbery 19k
6
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1
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1.1k
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Answer: Answer: ¿How I know if it is a batch effect or are real differences between my controls
15 days ago by i.sudbery 19k
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401
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Comment: Comment: chromHMM annotations
15 days ago by i.sudbery 19k
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401
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Answer: Answer: chromHMM annotations
17 days ago by i.sudbery 19k
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392
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Comment: Comment: DESeq: too low p-value for RNAseq
18 days ago by i.sudbery 19k
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372
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Comment: Comment: Mathematical/Statistical models to predict mRNA half-life
5 weeks ago by i.sudbery 19k
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1
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423
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Answer: Answer: UMI_extract for paired end reads of micro_RNA
5 weeks ago by i.sudbery 19k
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173
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Answer: Answer: Detecting presence of UMI from BAM/fastq files without prior knowledge
5 weeks ago by i.sudbery 19k
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466
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Answer: Answer: conda install -Killed
5 weeks ago by i.sudbery 19k
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354
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Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
6 weeks ago by i.sudbery 19k
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200
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Comment: Comment: RNA-seq DE with AAV injection
6 weeks ago by i.sudbery 19k
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1
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583
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Comment: Comment: Difference between GLM and Wilcoxon rank sum test
6 weeks ago by i.sudbery 19k
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583
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Answer: Answer: Difference between GLM and Wilcoxon rank sum test
7 weeks ago by i.sudbery 19k
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489
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Comment: Comment: minimap2 gets killed, but it doesn't explain why
7 weeks ago by i.sudbery 19k
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255
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Answer: Answer: Error from cgat gtf2gtf --method=genes-to-unique-chunks
7 weeks ago by i.sudbery 19k
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0
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555
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Comment: Comment: Multiple unique reads sharing same UMI barcode
8 weeks ago by i.sudbery 19k
2
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1
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761
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Answer: Answer: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
8 weeks ago by i.sudbery 19k
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1
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555
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Comment: Comment: Multiple unique reads sharing same UMI barcode
8 weeks ago by i.sudbery 19k
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1
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555
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Comment: Comment: Multiple unique reads sharing same UMI barcode
8 weeks ago by i.sudbery 19k
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1
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360
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Answer: Answer: perplexed regarding the process of gene expression normalision
8 weeks ago by i.sudbery 19k
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0
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276
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Answer: Answer: Heteroscedasticity in RNA-seq data
9 weeks ago by i.sudbery 19k
2
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0
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636
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Answer: Answer: question on how differential expression is affected if there is differential abu
9 weeks ago by i.sudbery 19k
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0
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394
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Comment: Comment: Enrichment Analysis with Fisher's exact test
9 weeks ago by i.sudbery 19k
2
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2
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394
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Answer: Answer: Enrichment Analysis with Fisher's exact test
9 weeks ago by i.sudbery 19k
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0
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271
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Answer: Answer: Calling variants with UMI-collapsed duplex consensus reads
10 weeks ago by i.sudbery 19k
2
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1
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405
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Answer: Answer: UMI workflow resulting in bams with empty reads
10 weeks ago by i.sudbery 19k
0
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0
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383
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Comment: Comment: How to fix DESeq2 Error in checkFullRank(modelMatrix)
10 weeks ago by i.sudbery 19k
3
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1
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383
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Answer: Answer: How to fix DESeq2 Error in checkFullRank(modelMatrix)
10 weeks ago by i.sudbery 19k
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1
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492
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Comment: Comment: How to predication/annotation trans-splicing in genome
11 weeks ago by i.sudbery 19k
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404
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Comment: Comment: Difference between mRNA and transcript record types in GFF3 and GTF
11 weeks ago by i.sudbery 19k
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1
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404
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Comment: Comment: Difference between mRNA and transcript record types in GFF3 and GTF
11 weeks ago by i.sudbery 19k
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1
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579
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Answer: Answer: Why employ normalization methods, and how can they be utilized in DEG analysis?
11 weeks ago by i.sudbery 19k
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0
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243
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Answer: Answer: Is it possible to identify the strand of an RNA using UMI?
11 weeks ago by i.sudbery 19k
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0
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568
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Comment: Comment: PCA plot interpretation (single population)
11 weeks ago by i.sudbery 19k
2
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0
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771
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Comment: Comment: Tower Server configuration for NGS data analysis
11 weeks ago by i.sudbery 19k
2
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0
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771
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Answer: Answer: Tower Server configuration for NGS data analysis
11 weeks ago by i.sudbery 19k
1
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0
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403
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Comment: Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
3 months ago by i.sudbery 19k
1
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0
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251
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Answer: Answer: Differential Abundance between samples
3 months ago by i.sudbery 19k
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0
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1.6k
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Answer: Answer: GOSeq gene ontology enrichment analysis in rice
3 months ago by i.sudbery 19k
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0
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1.6k
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Comment: Comment: GOSeq gene ontology enrichment analysis in rice
3 months ago by i.sudbery 19k
0
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0
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193
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Answer: Answer: Batch correction for eQTL analysis
3 months ago by i.sudbery 19k
6
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1
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972
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Answer: Answer: How to overcome the imposter syndrome in bioinformatics?
3 months ago by i.sudbery 19k
2
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1
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1.4k
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Answer: Answer: How to speed Salmon index up
3 months ago by i.sudbery 19k
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0
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2.0k
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Comment: Comment: Determining computer time required
3 months ago by i.sudbery 19k
2
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0
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2.0k
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Comment: Comment: Determining computer time required
3 months ago by i.sudbery 19k
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1
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2.0k
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Comment: Comment: Determining computer time required
3 months ago by i.sudbery 19k
1,482 results • Page 1 of 30
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