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Comment: Comment: the relationship of ATAC-seq and H3K27ac
4.4 years ago by i.sudbery 22k
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Comment: Comment: DESeq2 model matrix not full rank
4.4 years ago by i.sudbery 22k
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Answer: Answer: Intrinsically disordered region(IDR) or Intrinsically disordered Protein(IDP)
4.4 years ago by i.sudbery 22k
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Answer: Answer: DESeq2 model matrix not full rank
4.4 years ago by i.sudbery 22k
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Comment: Comment: How to create a proper design matrix/contrast matrix for methylation 850k analys
4.4 years ago by i.sudbery 22k
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Comment: Comment: Should we keep only the uniquely mapped reads for gene expression
4.4 years ago by i.sudbery 22k
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Comment: Comment: Should we keep only the uniquely mapped reads for gene expression
4.4 years ago by i.sudbery 22k
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Comment: Comment: To retrieve the transcript from gff file with the longest isoform
4.4 years ago by i.sudbery 22k
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Comment: Comment: How to find conserved enhancers between human cell lines?
4.4 years ago by i.sudbery 22k
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Answer: Answer: Differentially expressed genes and their promoter region accessiblity
4.4 years ago by i.sudbery 22k
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Answer: Answer: Choosing the right pathways among gene set enrichment analysis results
4.4 years ago by i.sudbery 22k
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Comment: Comment: Is there a way to extract alignment score from STAR aligner bam files?
4.4 years ago by i.sudbery 22k
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Answer: Answer: Is there a way to extract alignment score from STAR aligner bam files?
4.4 years ago by i.sudbery 22k
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Comment: Comment: On whether or not to normalize scRNAseq expression like qPCR
4.4 years ago by i.sudbery 22k
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Comment: Comment: On whether or not to normalize scRNAseq expression like qPCR
4.4 years ago by i.sudbery 22k
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Comment: Comment: How to determine reasonable expression threshold for of a gene from scRNAseq to
4.4 years ago by i.sudbery 22k
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Comment: Comment: How to determine reasonable expression threshold for of a gene from scRNAseq to
4.4 years ago by i.sudbery 22k
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Answer: Answer: When comparing gene expression in different species, should I assemble separate
4.4 years ago by i.sudbery 22k
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Comment: Comment: How to determine reasonable expression threshold for of a gene from scRNAseq to
4.4 years ago by i.sudbery 22k
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Answer: Answer: How to generate GTF file from BLAST output?
4.4 years ago by i.sudbery 22k
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Answer: Answer: How to determine reasonable threshold for of a gene from scRNAseq to imply its b
4.4 years ago by i.sudbery 22k
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Comment: Comment: Proportion of RNAseq reads mapping to rRNA, tRNA, mRNA, and intergenic or antise
4.4 years ago by i.sudbery 22k
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Answer: Answer: Multifactor Design For RNA-seq Analysis
4.4 years ago by i.sudbery 22k
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Comment: Comment: Multifactor Design For RNA-seq Analysis
4.4 years ago by i.sudbery 22k
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Comment: Comment: Multifactor Design For RNA-seq Analysis
4.4 years ago by i.sudbery 22k
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Comment: Comment: Multifactor Design For RNA-seq Analysis
4.4 years ago by i.sudbery 22k
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2.8k
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Comment: Comment: Multifactor Design For RNA-seq Analysis
4.4 years ago by i.sudbery 22k
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2.2k
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Answer: Answer: Proportion of RNAseq reads mapping to rRNA, tRNA, mRNA, and intergenic or antise
4.4 years ago by i.sudbery 22k
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1
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Answer: Answer: How to combine UMIs split across reads 1 and 2 into a single UMI for deduplicati
4.4 years ago by i.sudbery 22k
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Comment: Comment: Alternative polyadenylation detection from short-read RNA-seq, software suggesti
4.4 years ago by i.sudbery 22k
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Comment: Comment: Alternative polyadenylation detection from short-read RNA-seq, software suggesti
4.5 years ago by i.sudbery 22k
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2.6k
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Answer: Answer: Alternative polyadenylation detection from short-read RNA-seq, software suggesti
4.5 years ago by i.sudbery 22k
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Comment: Comment: how to indentify unannotated exon-exon junction from a bam/sam file
4.5 years ago by i.sudbery 22k
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Comment: Comment: Micro analysis pipeline
4.5 years ago by i.sudbery 22k
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Answer: Answer: how to indentify unannotated exon-exon junction from a bam/sam file
4.5 years ago by i.sudbery 22k
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Comment: Comment: KEGG NOT RUN with new Bioconductor version 3.13 and 4.1 R version
4.5 years ago by i.sudbery 22k
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Comment: Comment: Is training data used exclusively in machine learning
4.5 years ago by i.sudbery 22k
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Comment: Comment: Is training data used exclusively in machine learning
4.5 years ago by i.sudbery 22k
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1.5k
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Comment: Comment: STAR after reverse complement with python
4.5 years ago by i.sudbery 22k
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2.3k
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Comment: Comment: Multi-factor Analysis in DeSEQ2
4.5 years ago by i.sudbery 22k
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2.3k
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Answer: Answer: Multi-factor Analysis in DeSEQ2
4.5 years ago by i.sudbery 22k
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831
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Comment: Comment: Differential Expression Analysis for miRNA
4.5 years ago by i.sudbery 22k
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Comment: Comment: Detailed Textbooks for bioinformatics and computational biology
4.5 years ago by i.sudbery 22k
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Comment: Comment: fixed effect vs random effects RNA analysis
4.5 years ago by i.sudbery 22k
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Comment: Comment: Normalizing across multiple RNA-seq datasets
4.5 years ago by i.sudbery 22k
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Answer: Answer: Gold standard for bulk RNA-seq downsampling - number of uniquely mapped reads
4.5 years ago by i.sudbery 22k
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Comment: Comment: Conceptual - Do I need to justify myself if I generate more than three replicate
4.5 years ago by i.sudbery 22k
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1
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5.9k
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Answer: Answer: Conceptual - Do I need to justify myself if I generate more than three replicate
4.5 years ago by i.sudbery 22k
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1.4k
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Comment: Comment: Normalizing across multiple RNA-seq datasets
4.5 years ago by i.sudbery 22k
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631
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Comment: Comment: what is the difference between a protein GWAS and pQTL study? are they the same
4.5 years ago by i.sudbery 22k
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