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Comment: C: Can I use Negative Binomial regression to model TPM counts?
4.9 years ago by i.sudbery 22k
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5.2k
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Answer: A: Transferring UMI from paired-end read 2 to header of read 1
4.9 years ago by i.sudbery 22k
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3.6k
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Comment: C: Can I use Negative Binomial regression to model TPM counts?
4.9 years ago by i.sudbery 22k
1
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1
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3.6k
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Comment: C: Can I use Negative Binomial regression to model TPM counts?
4.9 years ago by i.sudbery 22k
2
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1
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3.6k
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Comment: C: Can I use Negative Binomial regression to model TPM counts?
4.9 years ago by i.sudbery 22k
1
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1
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4.5k
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Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
4.9 years ago by i.sudbery 22k
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3.4k
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Comment: C: How to deduplicate UMI with mapping shift ?
4.9 years ago by i.sudbery 22k
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643
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Comment: C: miRNA target IDs to gene names
4.9 years ago by i.sudbery 22k
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2.8k
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Comment: C: FDR for multiple contrasts
4.9 years ago by i.sudbery 22k
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1.4k
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Comment: C: Way to check if gene A lies in the same ORF as gene B
4.9 years ago by i.sudbery 22k
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1.4k
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Comment: C: Way to check if gene A lies in the same ORF as gene B
4.9 years ago by i.sudbery 22k
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1
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4.5k
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Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
4.9 years ago by i.sudbery 22k
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2.2k
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Comment: C: Paper: Ten simple rules for biologists initiating a collaboration with computer
4.9 years ago by i.sudbery 22k
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2.2k
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Answer: A: Paper: Ten simple rules for biologists initiating a collaboration with computer
4.9 years ago by i.sudbery 22k
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1
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4.5k
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Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
4.9 years ago by i.sudbery 22k
1
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0
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4.5k
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Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
4.9 years ago by i.sudbery 22k
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5.4k
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Answer: A: Log Transformation of Raw data before Robust Z-score analysis
5.0 years ago by i.sudbery 22k
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1.3k
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Comment: C: DEXSeq for isoform data
5.0 years ago by i.sudbery 22k
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2.1k
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Comment: C: RNASeq - How to compare the expression of a single gene across batches
5.0 years ago by i.sudbery 22k
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1
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2.1k
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Answer: A: RNASeq - How to compare the expression of a single gene across batches
5.0 years ago by i.sudbery 22k
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1
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7.0k
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Comment: C: miRna-Seq, featureCounts problem
5.0 years ago by i.sudbery 22k
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1.7k
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Answer: A: get last exon form GTF
5.0 years ago by i.sudbery 22k
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2.0k
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Comment: C: Download entire gene sequences (including UTRs) with BioMart-Ensembl
5.0 years ago by i.sudbery 22k
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2.0k
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Comment: C: Download entire gene sequences (including UTRs) with BioMart-Ensembl
5.0 years ago by i.sudbery 22k
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2.9k
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Comment: C: UMI and the reason of high duplicate rate
5.0 years ago by i.sudbery 22k
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1.5k
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Comment: C: How to understand Upregulated and Downregulated between two conditions
5.0 years ago by i.sudbery 22k
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1.5k
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Answer: A: How to understand Upregulated and Downregulated between two conditions
5.0 years ago by i.sudbery 22k
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3.2k
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Answer: A: How is Log2FC calculated in a paired analysis
5.0 years ago by i.sudbery 22k
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1
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3.2k
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Comment: C: How is Log2FC calculated in a paired analysis
5.0 years ago by i.sudbery 22k
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1
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3.1k
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Comment: C: Tn5 bias in atac-seq
5.0 years ago by i.sudbery 22k
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3.1k
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Comment: C: Tn5 bias in atac-seq
5.0 years ago by i.sudbery 22k
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3.3k
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Answer: A: E: Package 'tophat' has no installation candidate
5.0 years ago by i.sudbery 22k
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2.6k
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Comment: C: Why are there duplicate peaks in ENCODE ATAC-seq output?
5.0 years ago by i.sudbery 22k
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2.3k
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Comment: C: Estimating Transcript Abundance with RSEM
5.0 years ago by i.sudbery 22k
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2.3k
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Comment: C: Estimating Transcript Abundance with RSEM
5.0 years ago by i.sudbery 22k
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1
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3.7k
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Comment: C: PC1 vs PC2 in separating healthy vs disease
5.0 years ago by i.sudbery 22k
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3.7k
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Comment: C: PC1 vs PC2 in separating healthy vs disease
5.0 years ago by i.sudbery 22k
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1.1k
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Answer: A: which site are good for NGS data?
5.0 years ago by i.sudbery 22k
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1.7k
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Answer: A: why different transcripts of same gene show up and down regulation in control vs
5.0 years ago by i.sudbery 22k
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1.7k
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Comment: C: why different transcripts of same gene show up and down regulation in control vs
5.0 years ago by i.sudbery 22k
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884
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Comment: C: how can i evaluate the different between two samples of distribution of peaks in
5.0 years ago by i.sudbery 22k
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1.8k
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Comment: C: Genes inhibiting each other's expression
5.0 years ago by i.sudbery 22k
1
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2
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1.8k
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Answer: A: Genes inhibiting each other's expression
5.0 years ago by i.sudbery 22k
11
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16k
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Answer: A: Difference between padj and FDR
5.0 years ago by i.sudbery 22k
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4.5k
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Answer: A: Why are we assuming most genes are not differentially expressed?
updated 5.0 years ago by 45k • written 5.0 years ago by 22k
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4.5k
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Comment: C: Why are we assuming most genes are not differentially expressed?
5.0 years ago by i.sudbery 22k
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1.5k
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Answer: A: HTseq feature count handling of transcripts with shared exons?
5.1 years ago by i.sudbery 22k
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1.5k
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Comment: C: How reproducible is the DEG analysis?
5.1 years ago by i.sudbery 22k
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1.5k
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Answer: A: How reproducible is the DEG analysis?
5.1 years ago by i.sudbery 22k
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1
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1.5k
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Comment: C: How reproducible is the DEG analysis?
5.1 years ago by i.sudbery 22k
1,719 results • Page 19 of 35
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