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2
votes
1
reply
2.8k
views
Answer:
C: Help interpretating DESeq2 output
5.0 years ago by
i.sudbery
22k
1
vote
1
reply
1.8k
views
Comment:
C: Tools for generating a list of known DNA binding motifs for a DNA binding protei
5.0 years ago by
i.sudbery
22k
0
votes
1
reply
1.8k
views
Comment:
C: Tools for identifying known DNA binding motifs for a protein
5.0 years ago by
i.sudbery
22k
6
votes
0
replies
2.3k
views
Answer:
A: DNA in pixels
5.0 years ago by
i.sudbery
22k
1
vote
1
reply
6.0k
views
Comment:
C: Installing FastQC for command line in MobaXTerm
5.0 years ago by
i.sudbery
22k
0
votes
0
replies
6.0k
views
Answer:
A: Installing FastQC for command line in MobaXTerm
5.0 years ago by
i.sudbery
22k
0
votes
0
replies
980
views
Answer:
A: Ribo_seq data analysis
5.0 years ago by
i.sudbery
22k
1
vote
0
replies
5.4k
views
Comment:
C: Transferring UMI from paired-end read 2 to header of read 1
5.0 years ago by
i.sudbery
22k
1
vote
1
reply
3.8k
views
Comment:
C: Can I use Negative Binomial regression to model TPM counts?
5.0 years ago by
i.sudbery
22k
1
vote
1
reply
3.8k
views
Comment:
C: Can I use Negative Binomial regression to model TPM counts?
5.0 years ago by
i.sudbery
22k
1
vote
1
reply
5.4k
views
Answer:
A: Transferring UMI from paired-end read 2 to header of read 1
5.0 years ago by
i.sudbery
22k
2
votes
1
reply
3.8k
views
Comment:
C: Can I use Negative Binomial regression to model TPM counts?
5.0 years ago by
i.sudbery
22k
1
vote
1
reply
3.8k
views
Comment:
C: Can I use Negative Binomial regression to model TPM counts?
5.0 years ago by
i.sudbery
22k
2
votes
1
reply
3.8k
views
Comment:
C: Can I use Negative Binomial regression to model TPM counts?
5.0 years ago by
i.sudbery
22k
1
vote
1
reply
4.7k
views
Comment:
C: how to identify where multi-mappers, or "non primary hits" are mapping to
5.1 years ago by
i.sudbery
22k
1
vote
0
replies
3.6k
views
Comment:
C: How to deduplicate UMI with mapping shift ?
5.1 years ago by
i.sudbery
22k
0
votes
0
replies
679
views
Comment:
C: miRNA target IDs to gene names
5.1 years ago by
i.sudbery
22k
0
votes
0
replies
2.9k
views
Comment:
C: FDR for multiple contrasts
5.1 years ago by
i.sudbery
22k
0
votes
0
replies
1.5k
views
Comment:
C: Way to check if gene A lies in the same ORF as gene B
5.1 years ago by
i.sudbery
22k
0
votes
1
reply
1.5k
views
Comment:
C: Way to check if gene A lies in the same ORF as gene B
5.1 years ago by
i.sudbery
22k
1
vote
1
reply
4.7k
views
Comment:
C: how to identify where multi-mappers, or "non primary hits" are mapping to
5.1 years ago by
i.sudbery
22k
0
votes
0
replies
2.4k
views
Comment:
C: Paper: Ten simple rules for biologists initiating a collaboration with computer
5.1 years ago by
i.sudbery
22k
1
vote
0
replies
2.4k
views
Answer:
A: Paper: Ten simple rules for biologists initiating a collaboration with computer
5.1 years ago by
i.sudbery
22k
0
votes
1
reply
4.7k
views
Comment:
C: how to identify where multi-mappers, or "non primary hits" are mapping to
5.1 years ago by
i.sudbery
22k
1
vote
0
replies
4.7k
views
Comment:
C: how to identify where multi-mappers, or "non primary hits" are mapping to
5.1 years ago by
i.sudbery
22k
0
votes
0
replies
5.6k
views
Answer:
A: Log Transformation of Raw data before Robust Z-score analysis
5.1 years ago by
i.sudbery
22k
0
votes
0
replies
1.4k
views
Comment:
C: DEXSeq for isoform data
5.1 years ago by
i.sudbery
22k
0
votes
0
replies
2.2k
views
Comment:
C: RNASeq - How to compare the expression of a single gene across batches
5.1 years ago by
i.sudbery
22k
2
votes
1
reply
2.2k
views
Answer:
A: RNASeq - How to compare the expression of a single gene across batches
5.1 years ago by
i.sudbery
22k
1
vote
1
reply
7.3k
views
Comment:
C: miRna-Seq, featureCounts problem
5.1 years ago by
i.sudbery
22k
0
votes
0
replies
1.8k
views
Answer:
A: get last exon form GTF
5.1 years ago by
i.sudbery
22k
1
vote
0
replies
2.1k
views
Comment:
C: Download entire gene sequences (including UTRs) with BioMart-Ensembl
5.1 years ago by
i.sudbery
22k
0
votes
1
reply
2.1k
views
Comment:
C: Download entire gene sequences (including UTRs) with BioMart-Ensembl
5.1 years ago by
i.sudbery
22k
1
vote
0
replies
3.1k
views
Comment:
C: UMI and the reason of high duplicate rate
5.1 years ago by
i.sudbery
22k
1
vote
0
replies
1.6k
views
Comment:
C: How to understand Upregulated and Downregulated between two conditions
5.1 years ago by
i.sudbery
22k
0
votes
1
reply
1.6k
views
Answer:
A: How to understand Upregulated and Downregulated between two conditions
5.1 years ago by
i.sudbery
22k
0
votes
1
reply
3.4k
views
Answer:
A: How is Log2FC calculated in a paired analysis
5.1 years ago by
i.sudbery
22k
0
votes
1
reply
3.4k
views
Comment:
C: How is Log2FC calculated in a paired analysis
5.1 years ago by
i.sudbery
22k
1
vote
1
reply
3.2k
views
Comment:
C: Tn5 bias in atac-seq
5.1 years ago by
i.sudbery
22k
0
votes
0
replies
3.2k
views
Comment:
C: Tn5 bias in atac-seq
5.1 years ago by
i.sudbery
22k
1
vote
0
replies
3.4k
views
Answer:
A: E: Package 'tophat' has no installation candidate
5.1 years ago by
i.sudbery
22k
0
votes
0
replies
2.8k
views
Comment:
C: Why are there duplicate peaks in ENCODE ATAC-seq output?
5.1 years ago by
i.sudbery
22k
0
votes
1
reply
2.3k
views
Comment:
C: Estimating Transcript Abundance with RSEM
5.1 years ago by
i.sudbery
22k
1
vote
1
reply
2.3k
views
Comment:
C: Estimating Transcript Abundance with RSEM
5.1 years ago by
i.sudbery
22k
0
votes
1
reply
3.9k
views
Comment:
C: PC1 vs PC2 in separating healthy vs disease
5.1 years ago by
i.sudbery
22k
2
votes
1
reply
3.9k
views
Comment:
C: PC1 vs PC2 in separating healthy vs disease
5.1 years ago by
i.sudbery
22k
2
votes
0
replies
1.1k
views
Answer:
A: which site are good for NGS data?
5.1 years ago by
i.sudbery
22k
3
votes
0
replies
1.8k
views
Answer:
A: why different transcripts of same gene show up and down regulation in control vs
5.1 years ago by
i.sudbery
22k
0
votes
0
replies
1.8k
views
Comment:
C: why different transcripts of same gene show up and down regulation in control vs
5.1 years ago by
i.sudbery
22k
0
votes
0
replies
920
views
Comment:
C: how can i evaluate the different between two samples of distribution of peaks in
5.1 years ago by
i.sudbery
22k
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