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0
votes
1
reply
1.9k
views
Comment:
C: Upgrade to 3.18 no longer allows optional parameters to be omitted
6.8 years ago by
i.sudbery
22k
0
votes
0
replies
2.2k
views
Comment:
C: Classification using publicly available RNA-seq dataset
6.8 years ago by
i.sudbery
22k
0
votes
1
reply
3.6k
views
Comment:
C: How to deduplicate UMI with mapping shift ?
6.8 years ago by
i.sudbery
22k
1
vote
1
reply
2.2k
views
Answer:
A: Classification using publicly available RNA-seq dataset
6.8 years ago by
i.sudbery
22k
1
vote
2
replies
3.6k
views
Answer:
A: How to deduplicate UMI with mapping shift ?
6.8 years ago by
i.sudbery
22k
0
votes
1
reply
17k
views
Comment:
C: De-duplicate UMI at FASTQ level
6.8 years ago by
i.sudbery
22k
1
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0
replies
3.2k
views
Answer:
A: Design matrix for voom: with or without batch blocking?
6.8 years ago by
i.sudbery
22k
0
votes
1
reply
17k
views
Comment:
C: De-duplicate UMI at FASTQ level
6.8 years ago by
i.sudbery
22k
0
votes
1
reply
17k
views
Comment:
C: De-duplicate UMI at FASTQ level
6.8 years ago by
i.sudbery
22k
1
vote
1
reply
4.8k
views
Comment:
C: how to provide background genes to do GO by david
6.8 years ago by
i.sudbery
22k
25
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0
replies
11k
views
Answer:
A: What is SizeFactors
6.8 years ago by
i.sudbery
22k
0
votes
1
reply
17k
views
Comment:
C: De-duplicate UMI at FASTQ level
6.8 years ago by
i.sudbery
22k
0
votes
1
reply
17k
views
Comment:
C: De-duplicate UMI at FASTQ level
6.8 years ago by
i.sudbery
22k
0
votes
1
reply
17k
views
Comment:
C: De-duplicate UMI at FASTQ level
6.8 years ago by
i.sudbery
22k
1
vote
1
reply
11k
views
Comment:
C: Removing UMI with UMI tools?
6.9 years ago by
i.sudbery
22k
7
votes
2
replies
11k
views
Answer:
A: Removing UMI with UMI tools?
6.9 years ago by
i.sudbery
22k
4
votes
0
replies
10k
views
Answer:
A: add UMI sequences to fastq read name
6.9 years ago by
i.sudbery
22k
0
votes
0
replies
11k
views
Comment:
C: Removing UMI with UMI tools?
6.9 years ago by
i.sudbery
22k
0
votes
0
replies
29k
views
Comment:
C: Relation between Log2 Fold change and Log2 TPM in RNA-seq data
6.9 years ago by
i.sudbery
22k
0
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1
reply
8.9k
views
Comment:
C: What batch correction was applied to pan-Cancer mRNA expression data?
6.9 years ago by
i.sudbery
22k
0
votes
1
reply
29k
views
Comment:
C: Relation between Log2 Fold change and Log2 TPM in RNA-seq data
6.9 years ago by
i.sudbery
22k
4
votes
1
reply
8.9k
views
Answer:
A: What batch correction was applied to pan-Cancer mRNA expression data?
6.9 years ago by
i.sudbery
22k
0
votes
0
replies
3.2k
views
Comment:
C: Aligning RNA-seq and ATAC-seq gene annotations
6.9 years ago by
i.sudbery
22k
0
votes
1
reply
3.2k
views
Comment:
C: Aligning RNA-seq and ATAC-seq gene annotations
6.9 years ago by
i.sudbery
22k
5
votes
1
reply
6.8k
views
Answer:
A: What's your preferred pathway enrichment analysis tool after DEG analysis and wh
6.9 years ago by
i.sudbery
22k
0
votes
1
reply
4.1k
views
Comment:
C: Comparing gene expression between two samples
6.9 years ago by
i.sudbery
22k
1
vote
1
reply
4.1k
views
Comment:
C: Comparing gene expression between two samples
6.9 years ago by
i.sudbery
22k
1
vote
1
reply
4.1k
views
Comment:
C: Comparing gene expression between two samples
6.9 years ago by
i.sudbery
22k
2
votes
1
reply
3.8k
views
Comment:
C: Extremely important marker gene has many reads based on IGV viewer but no quanti
6.9 years ago by
i.sudbery
22k
5
votes
1
reply
2.1k
views
Answer:
A: REF and ALT alleles seem to be wrong way round in dbSNP
6.9 years ago by
i.sudbery
22k
1
vote
0
replies
2.8k
views
Comment:
C: RNA-Seq Differential Expression Bash Scripting Error
6.9 years ago by
i.sudbery
22k
1
vote
1
reply
4.1k
views
Comment:
C: Comparing gene expression between two samples
6.9 years ago by
i.sudbery
22k
1
vote
1
reply
4.1k
views
Answer:
A: Comparing gene expression between two samples
6.9 years ago by
i.sudbery
22k
1
vote
0
replies
4.1k
views
Comment:
C: Comparing gene expression between two samples
6.9 years ago by
i.sudbery
22k
3
votes
1
reply
3.8k
views
Comment:
C: Extremely important marker gene has many reads based on IGV viewer but no quanti
6.9 years ago by
i.sudbery
22k
0
votes
1
reply
3.8k
views
Comment:
C: Extremely important marker gene has many reads based on IGV viewer but no quanti
6.9 years ago by
i.sudbery
22k
1
vote
1
reply
2.8k
views
Comment:
C: RNA-Seq Differential Expression Bash Scripting Error
6.9 years ago by
i.sudbery
22k
0
votes
1
reply
2.8k
views
Comment:
C: RNA-Seq Differential Expression Bash Scripting Error
6.9 years ago by
i.sudbery
22k
0
votes
1
reply
6.0k
views
Answer:
A: Calculate CG content in a fastq file
7.0 years ago by
i.sudbery
22k
3
votes
0
replies
4.2k
views
Answer:
A: DE Analysis starting from TPM matrix? Also, no replicates.
7.0 years ago by
i.sudbery
22k
1
vote
0
replies
4.6k
views
Comment:
C: limitations of Edge R or DEseq
7.0 years ago by
i.sudbery
22k
0
votes
0
replies
6.5k
views
Comment:
C: % of reads unmapped: too short - STAR 2.5.2b
7.0 years ago by
i.sudbery
22k
12
votes
1
reply
17k
views
Answer:
Answer: De-duplicate UMI at FASTQ level
8 months ago by
i.sudbery
22k
0
votes
0
replies
13k
views
Comment:
C: How to convert transcript level TPM to gene level TPM ?
7.1 years ago by
i.sudbery
22k
1
vote
1
reply
1.6k
views
Comment:
C: How is it possible to have more than 25000 genes in counts file?
7.1 years ago by
i.sudbery
22k
4
votes
0
replies
25k
views
Comment:
C: should I merge fastq files for different lanes before do QC?
7.1 years ago by
i.sudbery
22k
1
vote
0
replies
15k
views
Comment:
C: Did you remove ChIP-seq duplicates
7.1 years ago by
i.sudbery
22k
0
votes
0
replies
198k
views
Comment:
C: Fold change - a final explanation
7.1 years ago by
i.sudbery
22k
44
votes
3
replies
198k
views
Answer:
A: Fold change - a final explanation
7.1 years ago by
i.sudbery
22k
0
votes
0
replies
26k
views
Answer:
A: Which Operating System Do You Prefer For Bioinformatics?
7.1 years ago by
i.sudbery
22k
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