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Comment: C: Upgrade to 3.18 no longer allows optional parameters to be omitted
6.8 years ago by i.sudbery 22k
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Comment: C: Classification using publicly available RNA-seq dataset
6.8 years ago by i.sudbery 22k
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3.6k
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Comment: C: How to deduplicate UMI with mapping shift ?
6.8 years ago by i.sudbery 22k
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2.2k
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Answer: A: Classification using publicly available RNA-seq dataset
6.8 years ago by i.sudbery 22k
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3.6k
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Answer: A: How to deduplicate UMI with mapping shift ?
6.8 years ago by i.sudbery 22k
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1
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17k
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Comment: C: De-duplicate UMI at FASTQ level
6.8 years ago by i.sudbery 22k
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3.2k
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Answer: A: Design matrix for voom: with or without batch blocking?
6.8 years ago by i.sudbery 22k
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17k
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Comment: C: De-duplicate UMI at FASTQ level
6.8 years ago by i.sudbery 22k
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1
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17k
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Comment: C: De-duplicate UMI at FASTQ level
6.8 years ago by i.sudbery 22k
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1
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4.8k
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Comment: C: how to provide background genes to do GO by david
6.8 years ago by i.sudbery 22k
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11k
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Answer: A: What is SizeFactors
6.8 years ago by i.sudbery 22k
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1
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17k
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Comment: C: De-duplicate UMI at FASTQ level
6.8 years ago by i.sudbery 22k
0
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1
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17k
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Comment: C: De-duplicate UMI at FASTQ level
6.8 years ago by i.sudbery 22k
0
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1
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17k
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Comment: C: De-duplicate UMI at FASTQ level
6.8 years ago by i.sudbery 22k
1
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1
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11k
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Comment: C: Removing UMI with UMI tools?
6.9 years ago by i.sudbery 22k
7
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11k
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Answer: A: Removing UMI with UMI tools?
6.9 years ago by i.sudbery 22k
4
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10k
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Answer: A: add UMI sequences to fastq read name
6.9 years ago by i.sudbery 22k
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11k
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Comment: C: Removing UMI with UMI tools?
6.9 years ago by i.sudbery 22k
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29k
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Comment: C: Relation between Log2 Fold change and Log2 TPM in RNA-seq data
6.9 years ago by i.sudbery 22k
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1
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8.9k
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Comment: C: What batch correction was applied to pan-Cancer mRNA expression data?
6.9 years ago by i.sudbery 22k
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1
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29k
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Comment: C: Relation between Log2 Fold change and Log2 TPM in RNA-seq data
6.9 years ago by i.sudbery 22k
4
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1
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8.9k
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Answer: A: What batch correction was applied to pan-Cancer mRNA expression data?
6.9 years ago by i.sudbery 22k
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3.2k
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Comment: C: Aligning RNA-seq and ATAC-seq gene annotations
6.9 years ago by i.sudbery 22k
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1
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3.2k
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Comment: C: Aligning RNA-seq and ATAC-seq gene annotations
6.9 years ago by i.sudbery 22k
5
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1
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6.8k
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Answer: A: What's your preferred pathway enrichment analysis tool after DEG analysis and wh
6.9 years ago by i.sudbery 22k
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1
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4.1k
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Comment: C: Comparing gene expression between two samples
6.9 years ago by i.sudbery 22k
1
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1
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4.1k
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Comment: C: Comparing gene expression between two samples
6.9 years ago by i.sudbery 22k
1
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1
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4.1k
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Comment: C: Comparing gene expression between two samples
6.9 years ago by i.sudbery 22k
2
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1
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3.8k
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Comment: C: Extremely important marker gene has many reads based on IGV viewer but no quanti
6.9 years ago by i.sudbery 22k
5
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1
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2.1k
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Answer: A: REF and ALT alleles seem to be wrong way round in dbSNP
6.9 years ago by i.sudbery 22k
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0
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2.8k
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Comment: C: RNA-Seq Differential Expression Bash Scripting Error
6.9 years ago by i.sudbery 22k
1
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1
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4.1k
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Comment: C: Comparing gene expression between two samples
6.9 years ago by i.sudbery 22k
1
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1
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4.1k
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Answer: A: Comparing gene expression between two samples
6.9 years ago by i.sudbery 22k
1
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0
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4.1k
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Comment: C: Comparing gene expression between two samples
6.9 years ago by i.sudbery 22k
3
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1
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3.8k
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Comment: C: Extremely important marker gene has many reads based on IGV viewer but no quanti
6.9 years ago by i.sudbery 22k
0
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1
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3.8k
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Comment: C: Extremely important marker gene has many reads based on IGV viewer but no quanti
6.9 years ago by i.sudbery 22k
1
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1
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2.8k
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Comment: C: RNA-Seq Differential Expression Bash Scripting Error
6.9 years ago by i.sudbery 22k
0
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1
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2.8k
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Comment: C: RNA-Seq Differential Expression Bash Scripting Error
6.9 years ago by i.sudbery 22k
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1
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6.0k
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Answer: A: Calculate CG content in a fastq file
7.0 years ago by i.sudbery 22k
3
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4.2k
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Answer: A: DE Analysis starting from TPM matrix? Also, no replicates.
7.0 years ago by i.sudbery 22k
1
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0
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4.6k
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Comment: C: limitations of Edge R or DEseq
7.0 years ago by i.sudbery 22k
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6.5k
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Comment: C: % of reads unmapped: too short - STAR 2.5.2b
7.0 years ago by i.sudbery 22k
12
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1
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17k
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Answer: Answer: De-duplicate UMI at FASTQ level
8 months ago by i.sudbery 22k
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0
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13k
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Comment: C: How to convert transcript level TPM to gene level TPM ?
7.1 years ago by i.sudbery 22k
1
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1
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1.6k
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Comment: C: How is it possible to have more than 25000 genes in counts file?
7.1 years ago by i.sudbery 22k
4
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25k
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Comment: C: should I merge fastq files for different lanes before do QC?
7.1 years ago by i.sudbery 22k
1
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15k
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Comment: C: Did you remove ChIP-seq duplicates
7.1 years ago by i.sudbery 22k
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0
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198k
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Comment: C: Fold change - a final explanation
7.1 years ago by i.sudbery 22k
44
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3
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198k
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Answer: A: Fold change - a final explanation
7.1 years ago by i.sudbery 22k
0
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0
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26k
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Answer: A: Which Operating System Do You Prefer For Bioinformatics?
7.1 years ago by i.sudbery 22k
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