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Comment: Comment: RNASeq Analysis: data from different library
14 months ago by i.sudbery 22k
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1.2k
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Comment: Comment: Poor dispersion fit in DESeq2
14 months ago by i.sudbery 22k
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1.2k
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Comment: Comment: Dispersion fit - thoughts?
14 months ago by i.sudbery 22k
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5.7k
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Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
14 months ago by i.sudbery 22k
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5.7k
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Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
14 months ago by i.sudbery 22k
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5.7k
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Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
14 months ago by i.sudbery 22k
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1.2k
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Comment: Comment: How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-S
14 months ago by i.sudbery 22k
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1.2k
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Answer: Answer: Multiple SRR files correspond to the same GSM in GEO
14 months ago by i.sudbery 22k
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1.2k
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Answer: Answer: How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-S
14 months ago by i.sudbery 22k
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5.7k
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Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
14 months ago by i.sudbery 22k
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2.3k
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Comment: Comment: Differential expressed genes - much more DE genes for one factor in the additive
14 months ago by i.sudbery 22k
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2.3k
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Answer: Answer: Differential expressed genes - much more DE genes for one factor in the additive
14 months ago by i.sudbery 22k
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2.3k
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Comment: Comment: Differential expressed genes - much more DE genes for one factor in the additive
14 months ago by i.sudbery 22k
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2.7k
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Answer: Answer: High Detection of Duplication in RNAseq dataset
14 months ago by i.sudbery 22k
3
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966
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Answer: Answer: p value of significance for overlapping peaks
14 months ago by i.sudbery 22k
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862
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Answer: Answer: Weird correlation between RIP-seq replicates
14 months ago by i.sudbery 22k
2
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1.9k
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Comment: Comment: If changing the RNA-Seq count normalisation method changes the DGE and downstrea
14 months ago by i.sudbery 22k
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1
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1.3k
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Comment: Comment: How to make the length of the CDS of my bed file divisible by 3?
15 months ago by i.sudbery 22k
1
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1.3k
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Comment: Comment: How to make the length of the CDS of my bed file divisible by 3?
15 months ago by i.sudbery 22k
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2.6k
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Comment: Comment: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
15 months ago by i.sudbery 22k
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2.6k
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Answer: Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
15 months ago by i.sudbery 22k
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1
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3.4k
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Comment: Comment: why R scripts are preferred to biopython for RNA-Seq analyses?
15 months ago by i.sudbery 22k
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2.1k
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Comment: Comment: DESeq2 results vs. shrinkage results
16 months ago by i.sudbery 22k
4
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4.3k
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Answer: Answer: How to improve a bioinformatics study and paper so that it is not considered "to
16 months ago by i.sudbery 22k
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3.8k
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Comment: Comment: meaning of "primary alignment" in samtools
16 months ago by i.sudbery 22k
4
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1
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3.8k
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Answer: Answer: meaning of "primary alignment" in samtools
16 months ago by i.sudbery 22k
2
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1
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1.0k
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Answer: Answer: Defining the formula/contrasts to detect DEGs between pre vs post treatment
16 months ago by i.sudbery 22k
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1.1k
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Comment: Comment: Normalizacion RNASeq Doubts
16 months ago by i.sudbery 22k
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1
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1.9k
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Comment: Comment: Multiple same UMI's mapped to the same cell with different sequence
16 months ago by i.sudbery 22k
4
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1
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1.9k
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Answer: Answer: Multiple same UMI's mapped to the same cell with different sequence
16 months ago by i.sudbery 22k
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0
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919
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Comment: Comment: Chimeric reads analysis
16 months ago by i.sudbery 22k
2
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1
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2.1k
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Comment: Comment: best way to submit hpc job using snakemake
16 months ago by i.sudbery 22k
1
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1
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1.9k
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Answer: Answer: Differential analysis of enrichment results
16 months ago by i.sudbery 22k
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1
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919
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Comment: Comment: Chimeric reads analysis
16 months ago by i.sudbery 22k
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0
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1.6k
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Answer: Answer: scRNA-seq: Do people eliminate housekeeping genes for the sake of increasing alg
16 months ago by i.sudbery 22k
2
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1
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2.1k
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Answer: Answer: best way to submit hpc job using snakemake
16 months ago by i.sudbery 22k
3
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0
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776
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Answer: Answer: Batch correction between cancer only data and normal only data
16 months ago by i.sudbery 22k
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1
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1.6k
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Comment: Comment: Demultiplexing Tool
16 months ago by i.sudbery 22k
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0
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1.4k
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Comment: Comment: IGV - ChIP-Seq
16 months ago by i.sudbery 22k
2
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0
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862
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Answer: Answer: Statistical test or method to test relationship between nearby genes and CpG sit
16 months ago by i.sudbery 22k
1
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0
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1.3k
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Answer: Answer: Zero FPKM values after stringtie quantification
16 months ago by i.sudbery 22k
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0
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4.5k
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Comment: Comment: How to extract unmapped mate for specific reads using pysam or other module in p
16 months ago by i.sudbery 22k
0
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1
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754
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Answer: Answer: Error installing ACTIONet
16 months ago by i.sudbery 22k
0
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1
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868
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Comment: Comment: Changing existing identifiers in RNASeq data to gene names
16 months ago by i.sudbery 22k
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0
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687
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Answer: Answer: Computer modelling of metformin effect on mitochondria
17 months ago by i.sudbery 22k
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0
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1.3k
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Comment: Comment: Fold changes reversed - DESeq2
17 months ago by i.sudbery 22k
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0
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1.8k
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Comment: Comment: Does PRS distribution of target data should follow gaussian distribution?
17 months ago by i.sudbery 22k
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2
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1.8k
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Answer: Answer: Does PRS distribution of target data should follow gaussian distribution?
17 months ago by i.sudbery 22k
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2.0k
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Comment: Comment: Extracting UMIs from NEXTFLEX Small RNA-Seq reads using UMI_tools
17 months ago by i.sudbery 22k
2
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0
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1.3k
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Comment: Comment: Fold changes reversed - DESeq2
17 months ago by i.sudbery 22k
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