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Comment: Comment: How I know if it is a batch effect or are real differences between my controls a
19 months ago by i.sudbery 22k
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Answer: Answer: ¿How I know if it is a batch effect or are real differences between my controls
19 months ago by i.sudbery 22k
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Comment: Comment: chromHMM annotations
19 months ago by i.sudbery 22k
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Answer: Answer: chromHMM annotations
19 months ago by i.sudbery 22k
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Comment: Comment: DESeq: too low p-value for RNAseq
19 months ago by i.sudbery 22k
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Comment: Comment: Mathematical/Statistical models to predict mRNA half-life
20 months ago by i.sudbery 22k
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1.6k
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Answer: Answer: UMI_extract for paired end reads of micro_RNA
20 months ago by i.sudbery 22k
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954
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Answer: Answer: Detecting presence of UMI from BAM/fastq files without prior knowledge
20 months ago by i.sudbery 22k
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Answer: Answer: conda install -Killed
20 months ago by i.sudbery 22k
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Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
20 months ago by i.sudbery 22k
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962
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Comment: Comment: RNA-seq DE with AAV injection
20 months ago by i.sudbery 22k
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2.9k
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Comment: Comment: Difference between GLM and Wilcoxon rank sum test
20 months ago by i.sudbery 22k
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2.9k
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Answer: Answer: Difference between GLM and Wilcoxon rank sum test
20 months ago by i.sudbery 22k
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3.4k
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Comment: Comment: minimap2 gets killed, but it doesn't explain why
20 months ago by i.sudbery 22k
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973
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Answer: Answer: Error from cgat gtf2gtf --method=genes-to-unique-chunks
20 months ago by i.sudbery 22k
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Comment: Comment: Multiple unique reads sharing same UMI barcode
21 months ago by i.sudbery 22k
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2.9k
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Answer: Answer: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
21 months ago by i.sudbery 22k
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1.6k
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Comment: Comment: Multiple unique reads sharing same UMI barcode
21 months ago by i.sudbery 22k
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1.6k
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Comment: Comment: Multiple unique reads sharing same UMI barcode
21 months ago by i.sudbery 22k
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1.4k
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Answer: Answer: perplexed regarding the process of gene expression normalision
21 months ago by i.sudbery 22k
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739
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Answer: Answer: Heteroscedasticity in RNA-seq data
21 months ago by i.sudbery 22k
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1.2k
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Answer: Answer: question on how differential expression is affected if there is differential abu
21 months ago by i.sudbery 22k
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Comment: Comment: Enrichment Analysis with Fisher's exact test
21 months ago by i.sudbery 22k
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Answer: Answer: Enrichment Analysis with Fisher's exact test
21 months ago by i.sudbery 22k
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Answer: Answer: Calling variants with UMI-collapsed duplex consensus reads
21 months ago by i.sudbery 22k
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1.4k
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Answer: Answer: UMI workflow resulting in bams with empty reads
21 months ago by i.sudbery 22k
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1.2k
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Comment: Comment: How to fix DESeq2 Error in checkFullRank(modelMatrix)
21 months ago by i.sudbery 22k
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1.2k
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Answer: Answer: How to fix DESeq2 Error in checkFullRank(modelMatrix)
21 months ago by i.sudbery 22k
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1.3k
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Comment: Comment: How to predication/annotation trans-splicing in genome
21 months ago by i.sudbery 22k
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1.4k
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Comment: Comment: Difference between mRNA and transcript record types in GFF3 and GTF
21 months ago by i.sudbery 22k
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1.4k
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Comment: Comment: Difference between mRNA and transcript record types in GFF3 and GTF
21 months ago by i.sudbery 22k
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Answer: Answer: Why employ normalization methods, and how can they be utilized in DEG analysis?
21 months ago by i.sudbery 22k
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754
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Answer: Answer: Is it possible to identify the strand of an RNA using UMI?
21 months ago by i.sudbery 22k
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2.2k
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Comment: Comment: PCA plot interpretation (single population)
21 months ago by i.sudbery 22k
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2.8k
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Comment: Comment: Tower Server configuration for NGS data analysis
21 months ago by i.sudbery 22k
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Answer: Answer: Tower Server configuration for NGS data analysis
21 months ago by i.sudbery 22k
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1.5k
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Comment: Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
22 months ago by i.sudbery 22k
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0
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658
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Answer: Answer: Differential Abundance between samples
22 months ago by i.sudbery 22k
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2.5k
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Answer: Answer: GOSeq gene ontology enrichment analysis in rice
22 months ago by i.sudbery 22k
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2.5k
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Comment: Comment: GOSeq gene ontology enrichment analysis in rice
22 months ago by i.sudbery 22k
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708
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Answer: Answer: Batch correction for eQTL analysis
22 months ago by i.sudbery 22k
7
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2.6k
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Answer: Answer: How to overcome the imposter syndrome in bioinformatics?
22 months ago by i.sudbery 22k
2
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1
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5.1k
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Answer: Answer: How to speed Salmon index up
22 months ago by i.sudbery 22k
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6.8k
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Comment: Comment: Determining computer time required
22 months ago by i.sudbery 22k
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6.8k
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Comment: Comment: Determining computer time required
22 months ago by i.sudbery 22k
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6.8k
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Comment: Comment: Determining computer time required
22 months ago by i.sudbery 22k
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2.2k
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Answer: Answer: UMI-tools no tsv files at deduplication
22 months ago by i.sudbery 22k
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2.2k
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Comment: Comment: UMI-tools no tsv files at deduplication
22 months ago by i.sudbery 22k
0
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1
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2.2k
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Comment: Comment: UMI-tools no tsv files at deduplication
22 months ago by i.sudbery 22k
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2
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2.2k
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Comment: Comment: UMI-tools no tsv files at deduplication
22 months ago by i.sudbery 22k
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