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Answer: Answer: What does PCA results signify?
18 months ago by i.sudbery 19k
4
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2
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1.4k
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Answer: Answer: Are package downgrades a necessary evil in Conda?
18 months ago by i.sudbery 19k
4
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2
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1.8k
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Answer: Answer: UMI deduplication and output
18 months ago by i.sudbery 19k
2
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1
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9.5k
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Answer: Answer: Laptops for bioinformatics
18 months ago by i.sudbery 19k
1
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1
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630
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Answer: Answer: Bulk RNA-seq, seeing strong differences between groups at a timepoint post-infec
18 months ago by i.sudbery 19k
1
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0
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747
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Answer: Answer: GO ontology- no biological processes found
18 months ago by i.sudbery 19k
1
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1
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2.3k
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Answer: Answer: How to extract unmapped mate for specific reads using pysam or other module in p
18 months ago by i.sudbery 19k
1
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0
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679
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Answer: Answer: Expression level of mutant genes in RNAseq data
18 months ago by i.sudbery 19k
2
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0
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1.0k
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Answer: Answer: How to calculate/ extract co-ordinates of TSS and TTS from gtf file in excel ?
18 months ago by i.sudbery 19k
2
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1
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624
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Answer: Answer: How do I create input files required by iGEAK (or find alternatives to iGEAK) fo
18 months ago by i.sudbery 19k
5
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0
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2.0k
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Answer: Answer: Should I merge my technical replicates for bulk RNA seq?
18 months ago by i.sudbery 19k
1
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0
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892
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Answer: Answer: How to iterate through paired-end reads in pysam?
19 months ago by i.sudbery 19k
3
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1
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1.8k
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Answer: Answer: Limma Differential Expression with Duplicate Correlation
19 months ago by i.sudbery 19k
1
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1
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828
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Answer: Answer: Issue with DESeq2 gene outlier detection when having multiple groups
20 months ago by i.sudbery 19k
0
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0
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1.2k
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Answer: Answer: Is low N in-vivo research a blind spot for RNA-seq?
20 months ago by i.sudbery 19k
0
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0
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597
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Answer: Answer: How do I filter out reads where Read 2 doesn't map to the end of a fasta sequenc
20 months ago by i.sudbery 19k
2
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0
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746
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Answer: Answer: Statistical exams in case of low replicate number in RNAseq analysis
21 months ago by i.sudbery 19k
3
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2
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1.2k
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Answer: Answer: Fasta file is not converting properly to Indexed Fasta File
21 months ago by i.sudbery 19k
1
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0
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760
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Answer: Answer: Is the promoter part of whole of gene in the UCSC database?
21 months ago by i.sudbery 19k
2
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0
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492
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Answer: Answer: A method to find if a variant is Genomic or an RNA-Editing variant
21 months ago by i.sudbery 19k
4
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0
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867
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Answer: Answer: Modelling vs removing effects from confounding variables and their uses for down
21 months ago by i.sudbery 19k
2
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2
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1.3k
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Answer: Answer: Multiple Testing Correction for GO Terms
21 months ago by i.sudbery 19k
0
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0
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591
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Answer: Answer: A question for using data in ENCODE polyA plus RNA-seq for exon level expression
21 months ago by i.sudbery 19k
1
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0
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548
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Answer: Answer: What is retained from original vector construct/plasmid after RNA-sequencing?
21 months ago by i.sudbery 19k
2
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1
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911
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Answer: Answer: Differential Expression Analysis over time treatment
21 months ago by i.sudbery 19k
1
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1
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1.1k
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Answer: Answer: Does RSEM ignore STAR's splice-aware nature?
21 months ago by i.sudbery 19k
1
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1
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1.5k
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Answer: Answer: CPTA, TCGA, RNA seq, validation
21 months ago by i.sudbery 19k
5
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1
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1.4k
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Answer: Answer: Is there any journal article to reference removeBatchEffect function from Limma?
21 months ago by i.sudbery 19k
3
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1
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792
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Answer: Answer: Biomart doe not convert between RefSeq and Ensembl Transcripts in GRCh37?
22 months ago by i.sudbery 19k
1
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0
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1.0k
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Answer: Answer: Multiple exposure timelines (time-points) in one DESeq2 object or multiple DESeq
22 months ago by i.sudbery 19k
1
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0
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863
views
Answer: Answer: Crossing Wires with GTF files
23 months ago by i.sudbery 19k
0
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0
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599
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Answer: Answer: wgcna without clinical traits
23 months ago by i.sudbery 19k
2
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0
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730
views
Answer: Answer: What are the best options for Isoform Switching Analysis in R?
24 months ago by i.sudbery 19k
2
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1
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2.2k
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Answer: Answer: Kallisto and Salmon give different results
24 months ago by i.sudbery 19k
2
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0
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576
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Answer: Answer: how to find coordinates of 5prime and 3prime utr from transcriptome data generat
24 months ago by i.sudbery 19k
3
votes
0
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658
views
Answer: Answer: RNA-seq data, normality test, stat test
2.1 years ago by i.sudbery 19k
0
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1
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1.1k
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Answer: Answer: Cellular deconvolution does not work without batch effect correction
2.1 years ago by i.sudbery 19k
2
votes
1
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571
views
Answer: Answer: Study of similarity (contrary to differential expression analysis)
2.2 years ago by i.sudbery 19k
1
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1
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703
views
Answer: Answer: Make DESEq2 consider all levels in reduced model
2.2 years ago by i.sudbery 19k
1
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1
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3.7k
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Answer: Answer: Salmon alignment based quantification
2.2 years ago by i.sudbery 19k
3
votes
2
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5.2k
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Answer: Answer: Sufficient Specs for a laptop to work in bioinformatics
2.2 years ago by i.sudbery 19k
0
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1
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2.2k
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Answer: Answer: Mate pairs and paired reads confusion
2.2 years ago by i.sudbery 19k
1
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1
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794
views
Answer: Answer: Single sample vs. a control group in limma
2.2 years ago by i.sudbery 19k
1
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1
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4.7k
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Answer: Answer: Methodological problems are extremely common for enrichment analysis - beware th
2.2 years ago by i.sudbery 19k
1
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0
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911
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Answer: Answer: How can I make this type of images in R-studio or do you know any software to ma
2.3 years ago by i.sudbery 19k
2
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1
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1.4k
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Answer: Answer: miRNA nomenclature and how to handle miRNAs
2.3 years ago by i.sudbery 19k
1
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0
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745
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Answer: Answer: Harvesting number of miRNA interaction for the whole genome using DIANA tools (o
2.3 years ago by i.sudbery 19k
0
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1
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1.0k
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Answer: Answer: qPCR differential gene expression
2.3 years ago by i.sudbery 19k
2
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0
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2.0k
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Answer: Answer: Cannot differentiate between groups with heatmap
2.3 years ago by i.sudbery 19k
1
vote
0
replies
939
views
Answer: Answer: H3K27Ac enrichment but NO ATAC seq peak
2.3 years ago by i.sudbery 19k
566 results • Page 3 of 12
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