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2
votes
1
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1.6k
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Answer: A: Get sequences from a BAM file as strings spaced out as described by cigar
5.5 years ago by Matt Shirley 10k
87
votes
1
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181k
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Answer: A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
updated 5.6 years ago by 43k • written 11.4 years ago by 10k
43
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0
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71k
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Answer: A: Sequence length from Fasta
updated 5.7 years ago by 43k • written 9.5 years ago by 10k
1
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0
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4.8k
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Answer: A: Problem iterating through BAM file using pysam
updated 5.7 years ago by 43k • written 8.2 years ago by 10k
4
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0
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200k
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Answer: Answer: Correct Way To Parse A Fasta File In Python
updated 6 months ago by 43k • written 9.9 years ago by 10k
6
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2
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2.9k
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Answer: A: is this a potential mosaicism?
5.8 years ago by Matt Shirley 10k
2
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1
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4.2k
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Answer: A: How to use pysam to execute "samtools fastq xxx.sam>xxx.fastq"
6.2 years ago by Matt Shirley 10k
0
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0
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6.1k
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Answer: A: Rename FASTA files according to FASTA file header
6.3 years ago by Matt Shirley 10k
4
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1
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3.8k
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Answer: A: A very short gene with very high TPM
6.3 years ago by Matt Shirley 10k
0
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0
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5.9k
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Answer: A: Pysam is giving - ValueError: reference_id -1 out of range 0<=tid<65334. Any su
6.3 years ago by Matt Shirley 10k
1
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1
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3.2k
views
Answer: A: Binning fasta sequences by size?
6.4 years ago by Matt Shirley 10k
1
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0
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3.0k
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Answer: A: problem in fastq-dump of SRA file
6.4 years ago by Matt Shirley 10k
0
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1
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2.0k
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Answer: A: How to fix Prokka`s annotation software error?
6.6 years ago by Matt Shirley 10k
0
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0
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3.3k
views
Answer: A: Is there a way to fetch genomic sequences at given coordinates without downloadi
6.7 years ago by Matt Shirley 10k
1
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0
replies
6.5k
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Answer: A: chrom.sizes computed locally
6.7 years ago by Matt Shirley 10k
2
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0
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17k
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Answer: A: Convert sequence file to fasta format using python
6.7 years ago by Matt Shirley 10k
1
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0
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2.3k
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Answer: A: Consensus fasta file with uncovered bases set to Ns
6.7 years ago by Matt Shirley 10k
1
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1
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6.8k
views
Answer: A: Rename headers of multiple fasta files inside loop
6.8 years ago by Matt Shirley 10k
1
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0
replies
1.9k
views
Answer: A: faidx implementation with C++
6.8 years ago by Matt Shirley 10k
4
votes
1
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3.1k
views
Answer: A: Soft-clipping of reads in Amplicon-sequenced data
6.8 years ago by Matt Shirley 10k
2
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0
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5.0k
views
Answer: A: samtools faidx error
6.8 years ago by Matt Shirley 10k
2
votes
1
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6.5k
views
Answer: A: change specific bases in a fasta file
6.8 years ago by Matt Shirley 10k
1
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1
reply
1.5k
views
Answer: A: Is there any software that can highlight or show the paired end reads within .sa
6.8 years ago by Matt Shirley 10k
5
votes
2
replies
8.1k
views
Answer: A: How to get fasta sequences of features from a GFF3 file?
6.8 years ago by Matt Shirley 10k
3
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1
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8.0k
views
Answer: A: Add tags to BAM/SAM file
6.8 years ago by Matt Shirley 10k
2
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0
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2.0k
views
Answer: A: Processing FASTA files
6.8 years ago by Matt Shirley 10k
1
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0
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5.6k
views
Answer: A: Extract nucleotides from fasta file by a single position
6.8 years ago by Matt Shirley 10k
3
votes
1
reply
1.8k
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Answer: A: How do I get a list of all species with a fasta genome in UCSC?
6.8 years ago by Matt Shirley 10k
0
votes
1
reply
3.4k
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Answer: A: Extact specific sequence from a fasta file into multiple files using ID and EC f
6.8 years ago by Matt Shirley 10k
9
votes
1
reply
3.6k
views
Answer: A: HISAT2 - soft-masked genome from UCSC
6.9 years ago by Matt Shirley 10k
0
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0
replies
1.4k
views
Answer: A: Downloading from nr data base.
7.0 years ago by Matt Shirley 10k
0
votes
1
reply
1.6k
views
Answer: A: Delete fasta sequence with a pattern "unassigned peptidases"
7.2 years ago by Matt Shirley 10k
2
votes
1
reply
3.7k
views
Answer: A: Parsing FASTA file using class in Python
7.2 years ago by Matt Shirley 10k
2
votes
0
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7.2k
views
Answer: A: fasta seq header
7.2 years ago by Matt Shirley 10k
1
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0
replies
2.2k
views
Answer: A: Is It Fastq Format
7.4 years ago by Matt Shirley 10k
3
votes
1
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7.1k
views
Answer: A: Being co-first author for two nature series journals, what kinds of job can I fi
7.5 years ago by Matt Shirley 10k
1
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0
replies
1.3k
views
Answer: A: I'm in need of a practice pileup file to test a program I'm making. Is there a p
7.6 years ago by Matt Shirley 10k
5
votes
0
replies
11k
views
Answer: A: how to return the componenets from PCA back to original variables?
7.6 years ago by Matt Shirley 10k
1
vote
0
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2.0k
views
Answer: A: parsing fasta file
7.6 years ago by Matt Shirley 10k
1
vote
0
replies
2.4k
views
Answer: A: Filter Fasta using regexp on header
7.8 years ago by Matt Shirley 10k
1
vote
1
reply
3.7k
views
Answer: A: merge multiple fasta sequences in two files into a single file line by line
7.8 years ago by Matt Shirley 10k
1
vote
1
reply
4.1k
views
Answer: A: Does vcftools or GATK have an option to skip indels when making alternate sequen
7.8 years ago by Matt Shirley 10k
3
votes
1
reply
6.3k
views
Answer: A: Making bed files from fasta
7.9 years ago by Matt Shirley 10k
1
vote
0
replies
32k
views
Answer: A: Downsampling dataset with more than 60 million reads
7.9 years ago by Matt Shirley 10k
1
vote
1
reply
2.0k
views
Answer: A: phred score from vcf quality
7.9 years ago by Matt Shirley 10k
1
vote
1
reply
2.0k
views
Answer: A: Is it possible to automatically update NCBI fasta sequences in command-line?
7.9 years ago by Matt Shirley 10k
1
vote
1
reply
4.1k
views
Answer: A: How to change Seqrecord id to numbers from a .txt file (Biopython)
8.0 years ago by Matt Shirley 10k
0
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1
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6.3k
views
Answer: C: Making bed files from fasta
8.0 years ago by Matt Shirley 10k
1
vote
1
reply
14k
views
Answer: A: How accurate is the IBD calculation by plink?
8.1 years ago by Matt Shirley 10k
0
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0
replies
3.3k
views
Answer: A: Custom exome array chip with 527 SNPs have chromosome information with 0
8.1 years ago by Matt Shirley 10k
293 results • Page 2 of 6
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