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3
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3.6k
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Answer: A: download CNV file for breast cancer BRCA from TCGA website
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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4.9k
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Comment: C: transcripts assemble by StringTie
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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4.9k
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Answer: A: transcripts assemble by StringTie
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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1
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1.8k
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Answer: A: TPM normalization of transcript
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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3.7k
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Comment: C: Fastest (non-pseudo) aligner for RNA-seq illumina seq data (year 2019)
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
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3.7k
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Answer: A: Get 3'UTR sequence using RNAseq read coverage
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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1
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3.7k
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Answer: A: Fastest (non-pseudo) aligner for RNA-seq illumina seq data (year 2019)
6.5 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
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2.0k
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Comment: C: Understanding FANTOM5 CAGE fields
6.6 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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1
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2.0k
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Answer: A: Understanding FANTOM5 CAGE fields
6.6 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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1
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2.6k
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Comment: C: How to create a summary statistics data table for omics data?
6.6 years ago by Kristoffer Vitting-Seerup ★ 4.2k
3
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2
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1.1k
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Tools for prediction of protein functionality from AA sequence along
gene RNA-Seq Assembly
updated 6.6 years ago by 9.3k • written 6.6 years ago by ★ 4.2k
3
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1
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1.8k
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Answer: A: Splice site usage from RNA-seq data
6.6 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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1.9k
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Comment: C: Is there a good way to get the proportions of isoforms *within* a condition usin
6.6 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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2.2k
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Answer: A: How to quantify mRNA transcripts from RNA-Seq data?
6.6 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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5.1k
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Comment: C: ANOVA or Linear regression for RNAseq data analysis with 3 factors
6.6 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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1.9k
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Comment: C: Is there a good way to get the proportions of isoforms *within* a condition usin
6.6 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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18k
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Comment: C: Tools To Do the Alternative Splicing Analysis
6.6 years ago by Kristoffer Vitting-Seerup ★ 4.2k
27
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3
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18k
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Answer: A: Tools To Do the Alternative Splicing Analysis
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
3
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0
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1.7k
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Answer: A: Given a list of cell surface genes, is there a computational possibility to pred
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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3.2k
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Answer: A: Analyzing 3' RNA seq library with DEseq2
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
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1.5k
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Comment: C: Can I perform de novo analysis on RNA seq file of Mus musculus?
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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1.0k
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Answer: A: Percent abundance of two separate species in transcriptome data
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
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1.5k
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Answer: A: Can I perform de novo analysis on RNA seq file of Mus musculus?
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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5.7k
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Comment: C: How does monocle identify the begging of pseudotime?
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
4
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1
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5.7k
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Answer: A: How does monocle identify the begging of pseudotime?
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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4.0k
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Comment: C: De novo transcriptome assembly produce too many transcripts
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
2
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0
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3.6k
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Comment: C: Stringtie elimination of important transcripts
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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3.6k
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Comment: C: Stringtie elimination of important transcripts
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
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3.6k
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Comment: C: Stringtie elimination of important transcripts
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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2.5k
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Answer: A: Is it appropriate to apply RUVseq on output from kallisto?
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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3.6k
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Comment: C: Stringtie elimination of important transcripts
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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15k
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Comment: C: What is RPKM/FPKM > 1 or 3 or 5?
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
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1.7k
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Answer: A: GETx patient RNA_Seq read count download
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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1.7k
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Comment: C: GETx patient RNA_Seq read count download
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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5.4k
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Comment: C: Is it fine to run SVM on RNA-seq read counts?
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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3.0k
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Answer: A: StringTie - Multimapped reads
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
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7.3k
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Answer: A: Differential expression: replicates in one condition, no replicates in the other
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
3
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0
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14k
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Answer: A: Stringtie to DESeq2
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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2.9k
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Comment: C: batch effect in RNAseq analysis using tophat cufflinks pipeline
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
2
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0
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2.9k
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Answer: A: batch effect in RNAseq analysis using tophat cufflinks pipeline
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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1
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13k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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1.5k
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Answer: A: Novel protein isoform - how to investigate tissue and tissue expression using da
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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3.7k
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Comment: C: scRNA-seq gene expression gradient onto tSNE plot
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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1
reply
13k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
replies
9.0k
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Answer: A: How to change cellranger multimapping algorithm
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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0
replies
3.5k
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Comment: C: Extremely important marker gene has many reads based on IGV viewer but no quanti
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
2
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0
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3.9k
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Answer: A: Suggested pipelines for finding somatic mutations using RNAseq in normal and tum
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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0
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1.0k
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Comment: C: Estimating individual batch factors
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
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1
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3.5k
views
Comment: C: How to deal with large inter-sample variation when using GTEx RNA-seq data?
6.7 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
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1
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3.5k
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Comment: C: How to deal with large inter-sample variation when using GTEx RNA-seq data?
6.8 years ago by Kristoffer Vitting-Seerup ★ 4.2k
489 results • Page 6 of 10
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