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Answer: A: RPKM and TPM calculation
updated 4.7 years ago by 82k • written 4.7 years ago by ★ 4.0k
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Answer: A: Can I perform differential gene expression with samples from Poly-A and Ribo-dep
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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Answer: A: How can I identify cells from Single cell experiment (SCE) using bulk RNA experi
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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2.0k
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Answer: A: How can I identify cells from Single cell experiment (SCE) using bulk RNA experi
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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Answer: A: How to create 2 seurat objects after subsetting data
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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Comment: C: Detecting GC Bias in Transcriptomes (RNA-seq)
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1.7k
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Comment: C: HISAT2/stringtie: intron impact on expression
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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3.3k
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Comment: C: How to create custom gtf annotation file?
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1.6k
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Comment: C: How to import RSEM expected_count data in ucsc to a deseq2 object ?
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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8.7k
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Comment: C: How single sample GSEA works
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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8.7k
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Comment: C: How single sample GSEA works
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1.7k
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Comment: C: HISAT2/stringtie: intron impact on expression
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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3.7k
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Comment: C: How to quantify gene expression when stringtie considers two adjacent genes as s
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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8.7k
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Comment: C: How single sample GSEA works
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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952
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Comment: C: How to Align only few transcript and get count?
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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3.7k
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Comment: C: How to quantify gene expression when stringtie considers two adjacent genes as s
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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3.7k
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Comment: C: Can I compare TPM values for a transcript across different transcriptome assembl
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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Comment: C: Is it possible to use gene count table (.csv) in ballgown package to determine d
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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3
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3.7k
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Answer: A: Can I compare TPM values for a transcript across different transcriptome assembl
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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1.2k
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Comment: C: Is it possible to use gene count table (.csv) in ballgown package to determine d
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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1.7k
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Answer: A: HISAT2/stringtie: intron impact on expression
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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3.7k
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Comment: C: How to quantify gene expression when stringtie considers two adjacent genes as s
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
2
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1
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3.7k
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Comment: C: How to quantify gene expression when stringtie considers two adjacent genes as s
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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2.4k
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Comment: C: How to remove cell cycle effct when analysing scRNA-seq data?
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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1
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2.4k
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Answer: A: How to remove cell cycle effct when analysing scRNA-seq data?
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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3.9k
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Comment: C: RNAseq - how to find novel transcripts in under different treatment using string
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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3
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3.9k
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Comment: C: RNAseq - how to find novel transcripts in under different treatment using string
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
2
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1
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3.7k
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Answer: A: How to quantify gene expression when stringtie considers two adjacent genes as s
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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952
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Comment: C: extraction significant genes
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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3.9k
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Comment: C: RNAseq - how to find novel transcripts in under different treatment using string
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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3.9k
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Comment: C: RNAseq - how to find novel transcripts in under different treatment using string
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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15k
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Comment: C: How to do FPKM differential analysis?
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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952
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Comment: C: extraction significant genes
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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3.2k
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Answer: A: how to caculate effective length for RNA sequencing?
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
3
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2
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15k
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Comment: A: How to do FPKM differential analysis?
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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1.8k
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Comment: C: Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
2
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1
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3.3k
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Comment: C: Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcri
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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1
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3.3k
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Comment: C: Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcri
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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1
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1.1k
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Answer: A: filter transcript isoforms with low support
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
2
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1
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3.3k
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Comment: C: Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcri
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
3
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1
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3.3k
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Answer: A: Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcri
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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940
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Comment: A: IsoformSwitchAnalyzeR and cuffdiff data error
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
3
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0
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3.8k
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Comment: C: Which bias flags to run with Salmon before DESeq2 analysis?
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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1.2k
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Comment: C: inconsistent results of rsem quantification
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
4
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1
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4.0k
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Answer: A: RNAseq: how to make design matrix for limma
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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21k
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Comment: C: Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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6.1k
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Answer: A: convert genome file to transcriptome file
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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4.1k
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Comment: C: limma voom - mean variance trend
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
2
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0
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1.1k
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Answer: A: Intron finder for 3' UTR sequences (non-model organism)?
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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1.1k
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Comment: C: Intron finder for 3' UTR sequences (non-model organism)?
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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