User: Manoj

gravatar for Manoj
Manoj30
Reputation:
30
Status:
New User
Location:
Canada
Last seen:
5 hours ago
Joined:
4 years, 4 months ago
Email:
s******@gmail.com

I am PostDoc in Agriculture research, Canada

Posts by Manoj

<prev • 88 results • page 1 of 9 • next >
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Comment: A: How to get the one upper and one lower numbers
... I improved my question please help! ...
written 2 days ago by Manoj30
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(Closed) How to get the one upper and one lower numbers
... ---------- I have two tab delimited files that are containing numbers in first two rows, I am looking to compare these files and need to grep one lower and one greater numbers in file 2 based on numbers in file 1. please suggest perl/python script. For example: File 1: 19951 19901 ...
assembly sequence alignment written 2 days ago by Manoj30 • updated 2 days ago by genomax70k
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Comment: C: how to find mismatch pattern from one file to another
... This command taking too long time without any output. My files are tab delimited.. ...
written 16 days ago by Manoj30
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how to find mismatch pattern from one file to another
... I have two tab delimited files, one contains list of nodes (file 1) and another file contains list of nodes and its additional details. I need to find nodes (file 1), which are not matching in another file (file 2). Please see example below: File 1: NODE_35_length_25224_cov_45.741 NODE_ ...
alignment sequence written 16 days ago by Manoj30
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Answer: A: how to grep list of words from a file to another file
... Hi, My interest is in grepping annotation (an example below) based on the list in file 1 not header. For the single node here is command that I tried, but I have a list of words, grep -w 'NODE_1_length_232048_cov_20.4417' marge.gff >out.txt ----------------------------------------------------- ...
written 18 days ago by Manoj30
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Answer: A: how to grep list of words from a file to another file
... There are total 36430 number of expressions are in file 1 and gff file contains nodes list, descriptions and seqs. Here is a part of gff file. Version is :: grep (GNU grep) 3.1 ##gff-version 3 ##sequence-region NODE_1_length_232048_cov_20.4417 1 232048 ##sequence-region NODE_2_length ...
written 18 days ago by Manoj30 • updated 18 days ago by RamRS23k
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Comment: C: how to grep list of words from a file to another file
... This command taking a long time without any results... grep -f words_list.fasta marge.gff >out_file.txt ...
written 18 days ago by Manoj30
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(Closed) how to grep list of words from a file to another file
... I have a list of words in a file (file 1) and large genomic gff information in another file (file 2). I want to grep information from file 2 of matching words from file 1 in output file (file 3) and also want to generate a file of words which are not matching in file 2. Please see the example below: ...
genome alignment sequencing written 19 days ago by Manoj30
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Comment: C: How to compare lines in to files?
... I updated my query. I am looking to generate a file of different lines between files. ...
written 4 weeks ago by Manoj30
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How to compare lines in to files?
... I have two tab delimited large files containing two columns, IDs and seqs. I am looking to generate output file of mismatch lines which are not available in each other files. Please see the example below: File 1: 0 AAAAGTGTGTAAAGAAGGGTAAAAAAAAAAACCGGATGCGAGGCATCCGGT 1000004 TACCGGGGAGTCG ...
genome alignment written 4 weeks ago by Manoj30 • updated 4 weeks ago by Pierre Lindenbaum122k

Latest awards to Manoj

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Popular Question 3.7 years ago, created a question with more than 1,000 views. For counts frequency of values in multiple columns in a text files
Popular Question 3.7 years ago, created a question with more than 1,000 views. For compare and search a list of ids in two text file
Popular Question 3.7 years ago, created a question with more than 1,000 views. For counts rows with numbers in columns

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