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Comment: C: Map eukaryotic genomic reads to transcript reference of closely related organism
7.9 years ago by al-ash ▴ 210
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5.7k
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Comment: C: Method for generating a reference-based genome assembly in fasta with no referen
7.9 years ago by al-ash ▴ 210
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Map eukaryotic genomic reads to transcript reference of closely related organism
RNA-Seq splice-aware splice-unaware mapping reads
updated 7.9 years ago by ▴ 50 • written 7.9 years ago by ▴ 210
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4.2k
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Comment: C: Reduce saturation by deleting the 3rd position in each codon of DNA seqs. R ape
8.2 years ago by al-ash ▴ 210
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9.3k
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Answer: A: Deleting The 3Rd Codon Position In A Multiple Sequence Alignment And Substitutio
8.2 years ago by al-ash ▴ 210
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Answer: A: Filtering Msa For Phylogenetic Tree Construction
8.3 years ago by al-ash ▴ 210
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93k
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Comment: C: How To Extract A Sequence From A Big (6Gb) Multifasta File ?
8.3 years ago by al-ash ▴ 210
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93k
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Comment: C: How To Extract A Sequence From A Big (6Gb) Multifasta File ?
8.3 years ago by al-ash ▴ 210
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7
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6.1k
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"Optimal" setting of CPU and max_memory in Trinity
Trinity CPU RAM
updated 8.5 years ago by ▴ 10 • written 8.8 years ago by ▴ 210
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Answer: A: How to download raw sequence data from GEO/SRA
8.7 years ago by al-ash ▴ 210
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6.1k
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Comment: C: "Optimal" setting of CPU and max_memory in Trinity
8.8 years ago by al-ash ▴ 210
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1
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6.1k
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Comment: C: "Optimal" setting of CPU and max_memory in Trinity
8.8 years ago by al-ash ▴ 210
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2.4k
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Comment: C: InterProScan standalone - error connected to non-unique fasta identifiers
8.8 years ago by al-ash ▴ 210
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2
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2.4k
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InterProScan standalone - error connected to non-unique fasta identifiers
InterProScan nucleic acid non-unique identifier
8.8 years ago by al-ash ▴ 210
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1
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3.8k
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Comment: C: Inconsistency between htseq-count output sorted by position or by name
8.8 years ago by al-ash ▴ 210
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1
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7.6k
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Comment: C: Extract exon and splice site information from gff files for HISAT analysis
8.9 years ago by al-ash ▴ 210
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4
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5.1k
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Entrez Direct E-utilities - using match and xtract to filter by data value
Entrez Direct E-utilities match xtract
updated 9.0 years ago by ▴ 330 • written 9.1 years ago by ▴ 210
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5.1k
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Comment: C: Entrez Direct E-utilities - using match and xtract to filter by data value
9.1 years ago by al-ash ▴ 210
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5.1k
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Comment: A: Entrez Direct E-utilities - using match and xtract to filter by data value
9.1 years ago by al-ash ▴ 210
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8.7k
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Comment: C: [share] Script to bulk retrieve DNA sequences by protein IDs from GenBank
9.1 years ago by al-ash ▴ 210
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7.1k
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How to append strings (from one file) to Fasta headers (in another file)
bioawk FASTA header append
updated 9.1 years ago by 22k • written 9.1 years ago by ▴ 210
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7.1k
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Comment: C: How to append strings (from one file) to Fasta headers (in another file)
9.1 years ago by al-ash ▴ 210
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0
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7.1k
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Comment: C: How to append strings (from one file) to Fasta headers (in another file)
9.1 years ago by al-ash ▴ 210
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1
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7.1k
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Comment: C: How to append strings (from one file) to Fasta headers (in another file)
9.1 years ago by al-ash ▴ 210
0
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1
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7.1k
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Comment: C: How to append strings (from one file) to Fasta headers (in another file)
9.1 years ago by al-ash ▴ 210
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0
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19k
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Comment: C: How To Add Specific Word To Fasta Header
9.1 years ago by al-ash ▴ 210
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10k
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Comment: C: Entrez direct E-utilities - "efetch" command to retrieve CDS with protein access
9.1 years ago by al-ash ▴ 210
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6.0k
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Comment: C: Batch download of protein FASTAs from GenBank using a list (>100) of protein acc
9.1 years ago by al-ash ▴ 210
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3
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6.0k
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Batch download of protein FASTAs from GenBank using a list (>100) of protein accessions
genbank FASTA E-utils
updated 9.2 years ago by ▴ 40 • written 9.2 years ago by ▴ 210
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