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Comment: Comment: stand alone blast display header in output file (customizing -outfmt 6)
20 months ago by al-ash ▴ 200
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18k
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Comment: Comment: Is There A Faster Replacement For Fastq-Dump (From The Sra-Toolkit)?
2.8 years ago by al-ash ▴ 200
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1.7k
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Comment: C: Appropriateness of using topology constraints to enforce species tree concordant
4.2 years ago by al-ash ▴ 200
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16k
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Comment: C: Downloading Data From Mg-Rast
4.2 years ago by al-ash ▴ 200
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85k
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Comment: C: Sequence Length Distribution From A Fastq File
4.7 years ago by al-ash ▴ 200
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2.1k
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Comment: C: Unable to perform tbl2asn for submission of transcriptome to Genbank
4.7 years ago by al-ash ▴ 200
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1
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997
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Comment: C: Submitting many transcriptomes to TSA - how to automatize?
4.7 years ago by al-ash ▴ 200
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2
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98k
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Comment: C: Multiline Fasta To Single Line Fasta
5.1 years ago by al-ash ▴ 200
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4.5k
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Comment: A: Principles and Workflow of 16S/18S/ITS Amplicon Sequencing
5.2 years ago by al-ash ▴ 200
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37k
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Comment: C: BLAST, setting maximum number of hits
updated 5.2 years ago by 43k • written 6.1 years ago by ▴ 200
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7.8k
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Comment: C: SRX from SRR IDs
5.2 years ago by al-ash ▴ 200
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1
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6.5k
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Comment: C: [share] Script to bulk retrieve DNA sequences by protein IDs from GenBank
5.4 years ago by al-ash ▴ 200
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1.8k
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Comment: C: Generate all bifurkating newick trees given for N taxa
5.4 years ago by al-ash ▴ 200
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2.6k
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Comment: C: Combine node/branch labels from multiple trees into one
5.4 years ago by al-ash ▴ 200
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0
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3.0k
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Comment: C: Platanus assembler : unable to start contig assembly, any problem with the comma
5.6 years ago by al-ash ▴ 200
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5.4k
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Comment: C: Species tree vs Gene trees during evolutionary analyses: Does it matter?
6.1 years ago by al-ash ▴ 200
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11k
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Comment: C: Unrooting Trees Help
6.1 years ago by al-ash ▴ 200
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6.5k
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Comment: C: [share] Script to bulk retrieve DNA sequences by protein IDs from GenBank
6.2 years ago by al-ash ▴ 200
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1
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13k
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Comment: C: Make matrix of protein pairwise identities/similarities from multiple protein se
6.2 years ago by al-ash ▴ 200
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1
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13k
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Comment: C: Make matrix of protein pairwise identities/similarities from multiple protein se
6.2 years ago by al-ash ▴ 200
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1
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4.9k
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Comment: C: Tune criteria for extraction of consensus sequence from bam/sam alignment
6.3 years ago by al-ash ▴ 200
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1
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4.9k
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Comment: C: Tune criteria for extraction of consensus sequence from bam/sam alignment
6.3 years ago by al-ash ▴ 200
1
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0
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17k
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Comment: C: gff3 to CDS fasta
6.3 years ago by al-ash ▴ 200
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7.6k
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Comment: C: Preventing EMBOSS transeq from renaming sequences
6.4 years ago by al-ash ▴ 200
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8.2k
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Comment: C: BAM format file to FASTA alignment file
6.4 years ago by al-ash ▴ 200
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49k
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Comment: Comment: Reference Assembly - Mapping Reads To A Reference Genome
updated 15 months ago by 43k • written 6.4 years ago by ▴ 200
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1.6k
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Comment: C: Map eukaryotic genomic reads to transcript reference of closely related organism
6.4 years ago by al-ash ▴ 200
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1
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5.0k
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Comment: C: Method for generating a reference-based genome assembly in fasta with no referen
6.4 years ago by al-ash ▴ 200
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0
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3.6k
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Comment: C: Reduce saturation by deleting the 3rd position in each codon of DNA seqs. R ape
6.7 years ago by al-ash ▴ 200
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1
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86k
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Comment: C: How To Extract A Sequence From A Big (6Gb) Multifasta File ?
6.9 years ago by al-ash ▴ 200
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1
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86k
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Comment: C: How To Extract A Sequence From A Big (6Gb) Multifasta File ?
6.9 years ago by al-ash ▴ 200
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1
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4.7k
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Comment: C: "Optimal" setting of CPU and max_memory in Trinity
7.3 years ago by al-ash ▴ 200
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1
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4.7k
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Comment: C: "Optimal" setting of CPU and max_memory in Trinity
7.3 years ago by al-ash ▴ 200
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0
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1.9k
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Comment: C: InterProScan standalone - error connected to non-unique fasta identifiers
7.3 years ago by al-ash ▴ 200
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1
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3.2k
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Comment: C: Inconsistency between htseq-count output sorted by position or by name
7.3 years ago by al-ash ▴ 200
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1
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6.9k
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Comment: C: Extract exon and splice site information from gff files for HISAT analysis
7.4 years ago by al-ash ▴ 200
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0
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4.1k
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Comment: C: Entrez Direct E-utilities - using match and xtract to filter by data value
7.6 years ago by al-ash ▴ 200
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0
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4.1k
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Comment: A: Entrez Direct E-utilities - using match and xtract to filter by data value
7.6 years ago by al-ash ▴ 200
0
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0
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6.5k
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Comment: C: [share] Script to bulk retrieve DNA sequences by protein IDs from GenBank
7.6 years ago by al-ash ▴ 200
0
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0
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5.6k
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Comment: C: How to append strings (from one file) to Fasta headers (in another file)
7.6 years ago by al-ash ▴ 200
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0
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5.6k
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Comment: C: How to append strings (from one file) to Fasta headers (in another file)
7.6 years ago by al-ash ▴ 200
0
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1
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5.6k
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Comment: C: How to append strings (from one file) to Fasta headers (in another file)
7.6 years ago by al-ash ▴ 200
0
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1
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5.6k
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Comment: C: How to append strings (from one file) to Fasta headers (in another file)
7.6 years ago by al-ash ▴ 200
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0
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17k
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Comment: C: How To Add Specific Word To Fasta Header
7.6 years ago by al-ash ▴ 200
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0
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8.4k
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Comment: C: Entrez direct E-utilities - "efetch" command to retrieve CDS with protein access
7.6 years ago by al-ash ▴ 200
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0
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4.9k
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Comment: C: Batch download of protein FASTAs from GenBank using a list (>100) of protein acc
7.6 years ago by al-ash ▴ 200
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