User: Chirag Parsania

gravatar for Chirag Parsania
Reputation:
240
Status:
Trusted
Location:
University of Macau
Last seen:
2 days, 7 hours ago
Joined:
1 year, 10 months ago
Email:
c**************@gmail.com

Posts by Chirag Parsania

<prev • 46 results • page 1 of 5 • next >
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Comment: A: NR BLAST on AWS
... I am using sbatch command to submit job on hpc through sh script. see the script below #!/bin/bash #SBATCH --job-name NR_BLAST #SBATCH --partition FHS_LONG #SBATCH --nodes 1 #SBATCH --tasks-per-node 24 #SBATCH --mem 128g #SBATCH --time 124:00:00 #SBATCH ...
written 2 days ago by Chirag Parsania240
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Comment: C: NR BLAST on AWS
... Hi Jacob, Thanks for useful suggestion. Blast has already been install on amazone by NCBI. you can check it [here][1]. They also provide perl script to run blast on AWS server. I am not sure about database. User may need to download the blast database in his/her amazone instance or it has also been ...
written 3 days ago by Chirag Parsania240
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NR BLAST on AWS
... Hi, Does anyone know howmuch it would cost to perform blast on [AWS][1] for 10,000 sequences against NR database ? Which amazone instance should we buy to perform NR blast ? Thanks, Chirag. [1]: https://aws.amazon.com/marketplace/pp/B00N44P7L6/ref=mkt_wir_ncbi_blast ...
aws amazone blast cloud written 4 days ago by Chirag Parsania240
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Comment: C: Significant difference in H3 CHiP data of two conditions (P-value for skewed dis
... Distribution is of log value. What is the difference between log-normal and log-transform ? ...
written 6 days ago by Chirag Parsania240
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Comment: C: Significant difference in H3 CHiP data of two conditions (P-value for skewed dis
... Let me explain more clearly. As I told, I have two different conditions for histone H3 data. For each condition I got a geneset. I plotted average line plot each geneset from respective condition. Now, I want to confirm that whatever difference I am seeing between these two conditions in average lin ...
written 6 days ago by Chirag Parsania240
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Comment: C: Significant difference in H3 CHiP data of two conditions (P-value for skewed dis
... Thanks a lot. I really appreciate :) Cheers, Chirag. ...
written 6 days ago by Chirag Parsania240
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Comment: C: P-value for skewed distribution
... Hi Michael Dondrup, Statistics has always direct connection with bioinformatics. I asked this question for one my NGS data analysis query in which I have H3 chip data of two different conditions. Statistically I want to prove that for set of genes difference of H3 between these two sample is ver ...
written 6 days ago by Chirag Parsania240
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Answer: A: Retrieving the gene list related to all GO ID
... Hi, I have automated the package for species of my interest. Use below github link for automated script of topGO. Input format provided in the sample data folder. [https://github.com/cparsania/topGO_Customized][1] ~Chirag. [1]: https://github.com/cparsania/topGO_Customized ...
written 6 days ago by Chirag Parsania240
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Significant difference in H3 CHiP data of two conditions (P-value for skewed distribution)
... Hi, Edit: I have two different conditions for histone H3 data. For each condition I got a geneset. I plotted average line plot for each geneset from respective condition. Now, I want to confirm that whatever difference I am seeing between these two conditions in average line is statistically signi ...
p-value h3 statistics chip-seq histone written 6 days ago by Chirag Parsania240
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Answer: A: Cytoscape and gene network
... I would suggest you to use cytoscap plugin [BINGO][1] followed by [EnrichmentMap][2]. These are very powerful plugins to create network of GO of differentially expressed genes. ~C. [1]: http://apps.cytoscape.org/apps/bingo [2]: http://apps.cytoscape.org/apps/enrichmentmap ...
written 5 months ago by Chirag Parsania240

Latest awards to Chirag Parsania

Good Answer 5 months ago, created an answer that was upvoted at least 5 times. For A: How to create 'gene' and 'transcript' entries in a GTF containing only exons
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: How to create 'gene' and 'transcript' entries in a GTF containing only exons
Popular Question 9 months ago, created a question with more than 1,000 views. For Z-Score calculation by heatmap.2

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