Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
29k
views
Comment: C: intersect VCF files
8.7 years ago by Len Trigg ★ 1.7k
2
votes
1
reply
2.7k
views
Answer: A: GA4GH hap.py understanding
8.8 years ago by Len Trigg ★ 1.7k
11
votes
0
replies
28k
views
Answer: A: Best way to compare two samples in a VCF file
8.8 years ago by Len Trigg ★ 1.7k
1
vote
1
reply
6.2k
views
Comment: C: Genotype representation for male chromosome X and Y
9.1 years ago by Len Trigg ★ 1.7k
2
votes
1
reply
4.1k
views
Answer: A: Non-cancer somatic mutation calling
9.3 years ago by Len Trigg ★ 1.7k
5
votes
0
replies
5.9k
views
Answer: A: How Does Left-Alignment Work For Indels? Does It Address All Complicated Issues
9.3 years ago by Len Trigg ★ 1.7k
2
votes
0
replies
3.2k
views
Answer: A: How is QUAL score calculated in multigenome VCF file?
9.4 years ago by Len Trigg ★ 1.7k
1
vote
1
reply
4.7k
views
Comment: C: how to add pedigree info into VCF
9.5 years ago by Len Trigg ★ 1.7k
2
votes
1
reply
4.7k
views
Comment: C: how to add pedigree info into VCF
9.5 years ago by Len Trigg ★ 1.7k
2
votes
0
replies
6.3k
views
Answer: A: MuTect2's variants missing QUAL score
9.5 years ago by Len Trigg ★ 1.7k
0
votes
1
reply
2.8k
views
Comment: C: about the use of varscan, somaticsnipper and samtools
9.5 years ago by Len Trigg ★ 1.7k
1
vote
0
replies
5.4k
views
Answer: A: mapping metagenomics samples to multiple references genome
9.9 years ago by Len Trigg ★ 1.7k
1
vote
1
reply
2.7k
views
Answer: Answer: indel position in repetitive regions
updated 3.1 years ago by 45k • written 9.9 years ago by ★ 1.7k
3
votes
0
replies
11k
views
Comment: C: fastq compression tools of choice
10.1 years ago by Len Trigg ★ 1.7k
0
votes
0
replies
2.2k
views
Answer: Answer: Convert reads alginment results of NGS metagenomic sample into abundance score
updated 3.0 years ago by 45k • written 10.1 years ago by ★ 1.7k
1
vote
0
replies
1.8k
views
Answer: Answer: Theoretical genome sequence
updated 3.0 years ago by 45k • written 10.1 years ago by ★ 1.7k
13
votes
1
reply
27k
views
Answer: Answer: Variant call format (VCF) file, how to get statistics per sample?
updated 3.0 years ago by 45k • written 10.1 years ago by ★ 1.7k
0
votes
0
replies
5.1k
views
Answer: Answer: VCF genotype generator
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 1.7k
2
votes
0
replies
2.0k
views
Answer: Answer: Need recommendations for Family aware Variant/indel caller for WGS data
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 1.7k
1
vote
0
replies
11k
views
Answer: Answer: randomly shuffle BAM file
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 1.7k
0
votes
0
replies
8.0k
views
Answer: A: How to align DNA reads against a database of protein references
10.2 years ago by Len Trigg ★ 1.7k
1
vote
1
reply
8.0k
views
Comment: Comment: Substitution error rate and indel error rate from BAM file
updated 2.8 years ago by 45k • written 10.2 years ago by ★ 1.7k
0
votes
0
replies
8.6k
views
Comment: C: Modifying fasta file based on vcf information
10.3 years ago by Len Trigg ★ 1.7k
1
vote
0
replies
2.8k
views
Answer: Answer: Sensitivity of variant calling
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 1.7k
1
vote
0
replies
8.2k
views
Answer: Answer: How to handle chr Y data in BAM files from exome sequencing of human females
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 1.7k
2
votes
0
replies
2.4k
views
Answer: Answer: GATK creating hs_err_pid.log file
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 1.7k
0
votes
0
replies
3.4k
views
Comment: Comment: The CIGAR '=' op for 'sequence match' in SAM - how and why?
updated 2.6 years ago by 45k • written 10.3 years ago by ★ 1.7k
1
vote
0
replies
6.4k
views
Answer: Answer: SNP calling pipeline - testing different programs
updated 2.6 years ago by 45k • written 10.4 years ago by ★ 1.7k
0
votes
1
reply
4.9k
views
Comment: Comment: How to identify Denovo Mutations in the child compared with parents?
updated 2.6 years ago by 45k • written 10.4 years ago by ★ 1.7k
0
votes
1
reply
4.9k
views
Answer: Answer: How to identify Denovo Mutations in the child compared with parents?
updated 2.6 years ago by 45k • written 10.4 years ago by ★ 1.7k
1
vote
0
replies
6.3k
views
Answer: Answer: What are acceptable SNP QUAL and GQ thresholds to filter on?
updated 2.6 years ago by 45k • written 10.4 years ago by ★ 1.7k
0
votes
0
replies
5.2k
views
Answer: Answer: Generate genotype specific FASTA sequences from VCF file and reference sequence
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 1.7k
2
votes
0
replies
5.6k
views
Answer: Answer: Multiple VCF file comparision
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 1.7k
1
vote
1
reply
17k
views
Answer: Answer: Split a VCF file into individual sample files
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 1.7k
0
votes
0
replies
3.5k
views
Answer: Answer: Which Somatic SNP Callers to Benchmark?
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 1.7k
1
vote
0
replies
6.0k
views
Answer: Answer: An Alternative To Blastx With Speed Similar To Bowtie
updated 3.2 years ago by 45k • written 10.5 years ago by ★ 1.7k
0
votes
0
replies
2.5k
views
Comment: C: get a set of reliable SNPs when knowing parent and child relationship
10.5 years ago by Len Trigg ★ 1.7k
1
vote
0
replies
2.5k
views
Answer: Answer: SNPs from bam file with no ref
updated 3.3 years ago by 45k • written 10.5 years ago by ★ 1.7k
0
votes
0
replies
2.5k
views
Answer: Answer: get a set of reliable SNPs when knowing parent and child relationship
updated 3.3 years ago by 45k • written 10.5 years ago by ★ 1.7k
0
votes
0
replies
9.7k
views
Comment: Comment: Comparing Genotypes from NA12878 to that of her parents (NA12891 and NA12892)
updated 3.4 years ago by 45k • written 10.5 years ago by ★ 1.7k
2
votes
1
reply
9.7k
views
Answer: Answer: Comparing Genotypes from NA12878 to that of her parents (NA12891 and NA12892)
updated 3.4 years ago by 45k • written 10.5 years ago by ★ 1.7k
0
votes
2
replies
5.7k
views
Answer: Answer: Questions on tagging low qual variants and DP filtering on a joint VCF (generate
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 1.7k
5
votes
1
reply
8.7k
views
Comment: Comment: VCF header line counting
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 1.7k
1
vote
1
reply
2.8k
views
Answer: Answer: Tool to obtain phased genotypes for family quartet?
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 1.7k
1
vote
0
replies
14k
views
Answer: Answer: How to calculate organism relative abundance from Illumina metagenomic data?
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 1.7k
1
vote
0
replies
26k
views
Answer: A: Is There A List Of Top N Bioinformatics Or Genome Software Company Or Studio ?
14.2 years ago by Len Trigg ★ 1.7k
1
vote
0
replies
7.4k
views
Answer: Answer: Has Anyone Had Experience With Complete Genomics Sequencing And Data Analysis?
updated 4.4 years ago by 45k • written 14.2 years ago by ★ 1.7k
0
votes
0
replies
3.9k
views
Comment: C: Macrogen Vs Complete Genomics
14.2 years ago by Len Trigg ★ 1.7k
98 results • Page 2 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6