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3
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232
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Answer: Answer: Interpretting IGV output
26 days ago by Carlo Yague 8.7k
3
votes
1
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317
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Answer: Answer: p-value and Boneferroni adjusted p-value the same in R
27 days ago by Carlo Yague 8.7k
2
votes
1
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760
views
Answer: Answer: Ciriquant not configuring hisat2 indexed files
5 weeks ago by Carlo Yague 8.7k
2
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1
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652
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Answer: Answer: Weird Fragment Length distribution multiQC
11 weeks ago by Carlo Yague 8.7k
3
votes
0
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322
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Answer: Answer: How is strandedness preserved with PCR (DNA/RNA-seq)
11 weeks ago by Carlo Yague 8.7k
1
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1
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920
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Answer: Answer: How to convert raw Nanopore R9 fast5 files to fastq files ?
11 weeks ago by Carlo Yague 8.7k
1
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1
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879
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Answer: Answer: How to find coordinates of TSS from 5pUTR and TTS from 3pUTR in transcriptome/ m
12 months ago by Carlo Yague 8.7k
1
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2
replies
1.1k
views
Answer: Answer: feature count command error
12 months ago by Carlo Yague 8.7k
1
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1
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622
views
Answer: Answer: RPKM normalization
12 months ago by Carlo Yague 8.7k
3
votes
1
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659
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Answer: Answer: ERCC normalization within DESeq2
12 months ago by Carlo Yague 8.7k
1
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1
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1.2k
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Answer: Answer: tophat2 installation error
12 months ago by Carlo Yague 8.7k
0
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1
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1.5k
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Answer: Answer: extract gene coordinates and TSS from gene list
13 months ago by Carlo Yague 8.7k
0
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1
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524
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Answer: Answer: DESeq2 replicates in time course data
14 months ago by Carlo Yague 8.7k
1
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1
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899
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Answer: Answer: I have a question in Size-selection(SPRI) in ChIP-seq library preparation
20 months ago by Carlo Yague 8.7k
3
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0
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610
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Answer: Answer: bedtools
21 months ago by Carlo Yague 8.7k
1
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1
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760
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Answer: Answer: Problem with extracting reverse-reverse read pairs
21 months ago by Carlo Yague 8.7k
0
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0
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2.3k
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Answer: Answer: Supplementary alignments in BAM-file
22 months ago by Carlo Yague 8.7k
1
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2
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784
views
Answer: Answer: finding coverage of bam file
2.0 years ago by Carlo Yague 8.7k
0
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1
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635
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Answer: Answer: [bash] No result file is created after hisat2
2.0 years ago by Carlo Yague 8.7k
1
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1
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1.6k
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Answer: Answer: How to conclude two genome sequences have the same origin?
2.0 years ago by Carlo Yague 8.7k
2
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0
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514
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Answer: Answer: Is it possible to find the mutation in RNA-seq reads?
2.0 years ago by Carlo Yague 8.7k
3
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1
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2.8k
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Answer: Answer: Genes encoded on both strands of DNA?
2.0 years ago by Carlo Yague 8.7k
8
votes
1
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3.0k
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Answer: Answer: Bowtie2 and Hisat2 which tool should I use?
2.1 years ago by Carlo Yague 8.7k
2
votes
1
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848
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Answer: Answer: Remove observations from txt file
2.1 years ago by Carlo Yague 8.7k
0
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0
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579
views
Answer: Answer: edgeR comparison of 2 samples
2.1 years ago by Carlo Yague 8.7k
3
votes
1
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1.7k
views
Answer: Answer: lncRNA analysis tutorial
2.1 years ago by Carlo Yague 8.7k
3
votes
1
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626
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Answer: Answer: Distribution of Violin Plot
2.1 years ago by Carlo Yague 8.7k
2
votes
1
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1.2k
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Answer: Answer: The clean reads with failed per base sequence content in fastQC
2.1 years ago by Carlo Yague 8.7k
0
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1
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2.3k
views
Answer: Answer: Bowtie: How do I map files to reference genome?
2.1 years ago by Carlo Yague 8.7k
0
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1
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668
views
Answer: Answer: Read depth per base DNA seq
2.1 years ago by Carlo Yague 8.7k
0
votes
0
replies
691
views
Answer: Answer: 3' mRNAseq Bioinformatic Considerations (bulk RNAseq)
2.2 years ago by Carlo Yague 8.7k
3
votes
1
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1.9k
views
Answer: Answer: help in my miRNA analysis
2.2 years ago by Carlo Yague 8.7k
3
votes
1
reply
1.8k
views
Answer: Answer: What do we call a transcript?
2.2 years ago by Carlo Yague 8.7k
1
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1
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2.6k
views
Answer: Answer: identify and remove adapter sequence
2.3 years ago by Carlo Yague 8.7k
1
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1
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1.4k
views
Answer: Answer: bamCoverage not generating BigWig output file when using for loop
2.3 years ago by Carlo Yague 8.7k
2
votes
1
reply
3.5k
views
Answer: Answer: How to perform normalization when converting ATAC bam file to bigwig file using
2.3 years ago by Carlo Yague 8.7k
3
votes
0
replies
816
views
Answer: Answer: Deseq2
2.3 years ago by Carlo Yague 8.7k
3
votes
2
replies
1.9k
views
Answer: Answer: delete a file
2.4 years ago by Carlo Yague 8.7k
1
vote
1
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613
views
Answer: Answer: different DEGs with different number of sample input.
2.4 years ago by Carlo Yague 8.7k
2
votes
1
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745
views
Answer: Answer: Why is it hard to align longer DNA sequences?
2.4 years ago by Carlo Yague 8.7k
2
votes
1
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954
views
Answer: Answer: P-value cut-off to identify SNPs at ChIP-seq peaks? [BedTools]
2.4 years ago by Carlo Yague 8.7k
0
votes
0
replies
1.4k
views
Answer: Answer: DESeq2 comparisons using contrast
2.4 years ago by Carlo Yague 8.7k
3
votes
2
replies
2.1k
views
Answer: Answer: Why all those reads in bam files were unmapped?
2.4 years ago by Carlo Yague 8.7k
0
votes
0
replies
662
views
Answer: Answer: RiboZero RNA Seq vs Poly A RNA seq
2.5 years ago by Carlo Yague 8.7k
0
votes
1
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1.2k
views
Answer: Answer: Duplication in DNA-seq vs RNA-seq
2.5 years ago by Carlo Yague 8.7k
1
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1
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2.1k
views
Answer: Answer: bubble plot of GO terms
2.5 years ago by Carlo Yague 8.7k
1
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1
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920
views
Answer: Answer: alignment using bowtie2
2.5 years ago by Carlo Yague 8.7k
3
votes
1
reply
1.8k
views
Answer: Answer: How does the DNA-seq machine know which strand that is forward/reverse?
2.5 years ago by Carlo Yague 8.7k
2
votes
0
replies
623
views
Answer: Answer: In the NGS pipeline, why read are sorted before marking duplicates?
2.5 years ago by Carlo Yague 8.7k
0
votes
1
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1.7k
views
Answer: Answer: Getting p-values for a proteomics dataset with repeated experiment results
2.5 years ago by Carlo Yague 8.7k
324 results • Page 1 of 7
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