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1
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1.3k
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Comment:
Comment: Difference in results from DESeq to EdgeR
2.3 years ago by
Carlo Yague
8.7k
1
vote
2
replies
1.3k
views
Comment:
Comment: Difference in results from DESeq to EdgeR
2.3 years ago by
Carlo Yague
8.7k
3
votes
2
replies
1.9k
views
Answer:
Answer: delete a file
2.3 years ago by
Carlo Yague
8.7k
1
vote
1
reply
609
views
Answer:
Answer: different DEGs with different number of sample input.
2.3 years ago by
Carlo Yague
8.7k
0
votes
0
replies
1.0k
views
Comment:
Comment: extract the all columns from 1 file giving a list of another file
2.3 years ago by
Carlo Yague
8.7k
0
votes
1
reply
1.0k
views
Comment:
Comment: extract the all columns from 1 file giving a list of another file
2.3 years ago by
Carlo Yague
8.7k
2
votes
1
reply
740
views
Answer:
Answer: Why is it hard to align longer DNA sequences?
2.4 years ago by
Carlo Yague
8.7k
0
votes
1
reply
2.5k
views
Comment:
Comment: How to remove Illumina_small_rna_3'_adapter adapters without knowing their seque
2.4 years ago by
Carlo Yague
8.7k
1
vote
2
replies
2.5k
views
Comment:
Comment: How to remove Illumina_small_rna_3'_adapter adapters without knowing their seque
2.4 years ago by
Carlo Yague
8.7k
1
vote
1
reply
2.5k
views
Comment:
Comment: How to remove Illumina_small_rna_3'_adapter adapters without knowing their seque
2.4 years ago by
Carlo Yague
8.7k
1
vote
1
reply
945
views
Comment:
Comment: P-value cut-off to identify SNPs at ChIP-seq peaks? [BedTools]
2.4 years ago by
Carlo Yague
8.7k
2
votes
1
reply
945
views
Answer:
Answer: P-value cut-off to identify SNPs at ChIP-seq peaks? [BedTools]
2.4 years ago by
Carlo Yague
8.7k
0
votes
0
replies
1.3k
views
Answer:
Answer: DESeq2 comparisons using contrast
2.4 years ago by
Carlo Yague
8.7k
3
votes
2
replies
2.1k
views
Answer:
Answer: Why all those reads in bam files were unmapped?
2.4 years ago by
Carlo Yague
8.7k
0
votes
0
replies
657
views
Answer:
Answer: RiboZero RNA Seq vs Poly A RNA seq
2.4 years ago by
Carlo Yague
8.7k
0
votes
0
replies
1.1k
views
Comment:
Comment: Duplication in DNA-seq vs RNA-seq
2.4 years ago by
Carlo Yague
8.7k
0
votes
1
reply
1.1k
views
Answer:
Answer: Duplication in DNA-seq vs RNA-seq
2.4 years ago by
Carlo Yague
8.7k
1
vote
1
reply
2.1k
views
Answer:
Answer: bubble plot of GO terms
2.4 years ago by
Carlo Yague
8.7k
0
votes
0
replies
2.1k
views
Comment:
Comment: ggplot
2.4 years ago by
Carlo Yague
8.7k
1
vote
0
replies
912
views
Comment:
Comment: alignment using bowtie2
2.5 years ago by
Carlo Yague
8.7k
1
vote
1
reply
912
views
Answer:
Answer: alignment using bowtie2
2.5 years ago by
Carlo Yague
8.7k
1
vote
0
replies
1.8k
views
Comment:
Comment: How does the DNA-seq machine know which strand that is forward/reverse?
2.5 years ago by
Carlo Yague
8.7k
1
vote
2
replies
1.8k
views
Comment:
Comment: How does the DNA-seq machine know which strand that is forward/reverse?
2.5 years ago by
Carlo Yague
8.7k
3
votes
1
reply
1.8k
views
Answer:
Answer: How does the DNA-seq machine know which strand that is forward/reverse?
2.5 years ago by
Carlo Yague
8.7k
2
votes
0
replies
616
views
Answer:
Answer: In the NGS pipeline, why read are sorted before marking duplicates?
2.5 years ago by
Carlo Yague
8.7k
0
votes
1
reply
1.6k
views
Answer:
Answer: Getting p-values for a proteomics dataset with repeated experiment results
2.5 years ago by
Carlo Yague
8.7k
0
votes
0
replies
723
views
Answer:
Answer: Official/centralized/designated genetic/biological knowledge graph?
2.5 years ago by
Carlo Yague
8.7k
1
vote
1
reply
1.1k
views
Answer:
Answer: Gene list for GO enrichment after DESeq2. Should I use a gene list of differenti
2.5 years ago by
Carlo Yague
8.7k
0
votes
1
reply
1.6k
views
Comment:
Comment: collapseReplicates in DESeq2 when the number of technical replicates per biosamp
2.5 years ago by
Carlo Yague
8.7k
2
votes
1
reply
1.6k
views
Answer:
Answer: collapseReplicates in DESeq2 when the number of technical replicates per biosamp
2.5 years ago by
Carlo Yague
8.7k
3
votes
1
reply
1.1k
views
Answer:
Answer: Clarification request isoforms, redundancy, ortholog, paralog , divergence , con
2.5 years ago by
Carlo Yague
8.7k
0
votes
1
reply
955
views
Answer:
Answer: Transcript assemblers from RNA-seq reads - a request for tool recommendation
2.5 years ago by
Carlo Yague
8.7k
3
votes
1
reply
5.6k
views
Answer:
Answer: Samfiles
2.5 years ago by
Carlo Yague
8.7k
0
votes
0
replies
1.6k
views
Comment:
Comment: calculate nucleotides frequencies from mapped reads in a BAM file
2.5 years ago by
Carlo Yague
8.7k
0
votes
1
reply
1.6k
views
Comment:
Comment: calculate nucleotides frequencies from mapped reads in a BAM file
2.5 years ago by
Carlo Yague
8.7k
1
vote
1
reply
1.6k
views
Answer:
Answer: calculate nucleotides frequencies from mapped reads in a BAM file
2.5 years ago by
Carlo Yague
8.7k
2
votes
0
replies
914
views
Answer:
Answer: How should I deal with my RNAseq result with high % of mutiple aligned reads?
2.5 years ago by
Carlo Yague
8.7k
0
votes
0
replies
6.0k
views
Comment:
Comment: Should I buy a new apple M1-max with 64Gb Ram for single cell RNA seq analysis?
2.5 years ago by
Carlo Yague
8.7k
0
votes
0
replies
2.8k
views
Comment:
Comment: Visualiation of samtools depth output in a plot
2.5 years ago by
Carlo Yague
8.7k
0
votes
1
reply
1.8k
views
Comment:
Comment: why those reads don't contain 0x2
2.5 years ago by
Carlo Yague
8.7k
2
votes
1
reply
1.8k
views
Answer:
Answer: why those reads don't contain 0x2
2.5 years ago by
Carlo Yague
8.7k
1
vote
1
reply
1.8k
views
Comment:
Comment: why those reads don't contain 0x2
2.5 years ago by
Carlo Yague
8.7k
2
votes
0
replies
622
views
Answer:
Answer: Consensus on poly-a selected lncRNAs for differential expression analysis
2.6 years ago by
Carlo Yague
8.7k
2
votes
2
replies
1.3k
views
Answer:
Answer: bowtie2 mapping qualities of 0
9 months ago by
Carlo Yague
8.7k
1
vote
1
reply
2.3k
views
Comment:
Comment: Count strand-specific 5' / 3' coverage across whole genome for paired-end fragme
2.6 years ago by
Carlo Yague
8.7k
0
votes
1
reply
2.9k
views
Comment:
Comment: PDB to FASTA
2.6 years ago by
Carlo Yague
8.7k
1
vote
1
reply
2.0k
views
Comment:
Comment: Best tools for miRNA target prediction
2.6 years ago by
Carlo Yague
8.7k
1
vote
1
reply
2.0k
views
Comment:
Comment: Best tools for miRNA target prediction
2.6 years ago by
Carlo Yague
8.7k
0
votes
1
reply
2.9k
views
Comment:
Comment: PDB to FASTA
2.6 years ago by
Carlo Yague
8.7k
0
votes
2
replies
1.6k
views
Comment:
Comment: Why my reads mapping rate extremely low
2.6 years ago by
Carlo Yague
8.7k
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