Moderator: Gjain
Gjain ♦ 5.6k
- Reputation:
- 5,570
- Status:
- Trusted
- Location:
- Bengaluru, India
- Website:
- http://www.linkedin.co...
- Twitter:
- @gauravjain49
- Last seen:
- 13 hours ago
- Joined:
- 9 years, 8 months ago
- Email:
- g***********@gmail.com
Bioinformatician with extensive experience in genomics and epigenomics. In-depth knowledge of computational biology and machine learning methodologies.
Specialties:
• Languages: Python, Perl, R, HTML/HTML5, PHP, Javascript, AJAX, Shell scripting, C/C++, Octave
• Big Data: Next generation sequencing, Statistical and bioinformatics data analysis, Machine learning algorithms
• High-throughput Assays: Chromosome Conformation Capture (3C)-based techniques (5C, Hi-C), ChIPseq, RNAseq
• Databases: MySQL, Oracle
• Other: UNIX/Linux, High performance cluster computing (HPCC), Linux server management, Vector graphics/illustration tools
Posts by Gjain
<prev
• 340 results •
page 1 of 34 •
next >
2
votes
4
answers
120
views
4
answers
... Even though it is a controversial topic among many of my colleagues I liked this paper
Hou, W., Ji, Z., Ji, H., & Hicks, S. C. (2020). A systematic evaluation of single-cell RNA-sequencing imputation methods. Genome biology, 21(1), 1-30.
[https://genomebiology.biomedcentral.com/articles/10.11 ...
written 13 hours ago by
Gjain ♦ 5.6k
0
votes
0
answers
474
views
0
answers
... The Technical University of Munich (TUM) is seeking a **Staff Scientist, Ph.D., or Postdoctoral Position in Bioinformatics**.
We are offering a Staff Scientist, Ph.D., or Postdoctoral position at the Institute of Molecular Oncology and Functional Genomics (www.imo.med.tum.de). The Institute is at t ...
written 3 months ago by
Gjain ♦ 5.6k
0
votes
0
answers
137
views
0
answers
... Hello Optimist!
We believe that this post does not fit the main topic of this site.
The post does not provide any details or fit the site in general.
For this reason we have closed your question. This allows us to keep the site focused
on the topics that the community can help with.
If you di ...
written 4 months ago by
Gjain ♦ 5.6k
0
votes
0
answers
277
views
0
answers
... An important point here is to make sure you do not loose reads with multi mapping as many piRNAs are similar sequences. ...
written 5 months ago by
Gjain ♦ 5.6k
0
votes
2
answers
388
views
2
answers
... You can either use featurecounts or multiBamSummary from deeptools to generate the gene expression table. ...
written 6 months ago by
Gjain ♦ 5.6k
0
votes
0
answers
252
views
0
answers
... Can you please show an example of such peak (Preferably an IGV screenshot) where the summit is not the highest point? ...
written 9 months ago by
Gjain ♦ 5.6k
0
votes
1
answer
433
views
1
answers
... This is a good paper to go through
Wang, X., Park, J., Susztak, K., Zhang, N. R., & Li, M. (2019). Bulk tissue cell type deconvolution with multi-subject single-cell expression reference. Nature communications, 10(1), 1-9.
Link: [https://www.nature.com/articles/s41467-018-08023-x][1]
![enter ...
written 13 months ago by
Gjain ♦ 5.6k
1
vote
1
answer
376
views
1
answers
... What issues are you facing? ...
written 13 months ago by
Gjain ♦ 5.6k
0
votes
2
answers
2.1k
views
2
answers
... This helped me even after 5 years ... tried various sorting but this one works perfectly .... thanks
sort -k1,1 -k2n file > sortedFile
Works great.
...
written 15 months ago by
Gjain ♦ 5.6k
0
votes
0
answers
632
views
0
answers
Comment:
C: HOMER HiC interactions
... Thanks for the paper and the link. I was not aware of that so that is good to know.
I think you can try the standard HiC pipelines and a nice tutorial can be found here: [https://hms-dbmi.github.io/hic-data-analysis-bootcamp/#1][1]
I hope this helps.
[1]: https://hms-dbmi.github.io/hic-data-a ...
written 15 months ago by
Gjain ♦ 5.6k
Latest awards to Gjain
Teacher
19 months ago,
created an answer with at least 3 up-votes.
For A: Greatest Achievements In Bioinformatics Other Than Human Genome
Good Answer
20 months ago,
created an answer that was upvoted at least 5 times.
For A: Database Of Essential Genes
Great Question
20 months ago,
created a question with more than 5,000 views.
For Chromosome Position From Ucsc Genome Browser
Appreciated
2.1 years ago,
created a post with more than 5 votes.
For A: Database Of Essential Genes
Teacher
2.4 years ago,
created an answer with at least 3 up-votes.
For A: Greatest Achievements In Bioinformatics Other Than Human Genome
Scholar
2.4 years ago,
created an answer that has been accepted.
For A: What Are The Exact Algorithms For Motif Discovery?
Appreciated
2.6 years ago,
created a post with more than 5 votes.
For A: Database Of Essential Genes
Good Answer
2.6 years ago,
created an answer that was upvoted at least 5 times.
For A: Database Of Essential Genes
Scholar
3.2 years ago,
created an answer that has been accepted.
For A: What Are The Exact Algorithms For Motif Discovery?
Scholar
3.2 years ago,
created an answer that has been accepted.
For A: What Are The Exact Algorithms For Motif Discovery?
Popular Question
3.6 years ago,
created a question with more than 1,000 views.
For Bioinformatician/Biostatistician: Transcriptomics/Epigenetics in brain diseases (Goettingen, Germany)
Great Question
3.7 years ago,
created a question with more than 5,000 views.
For Chromosome Position From Ucsc Genome Browser
Scholar
3.8 years ago,
created an answer that has been accepted.
For A: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
Popular Question
4.0 years ago,
created a question with more than 1,000 views.
For Bioinformatician/Biostatistician: Transcriptomics/Epigenetics in brain diseases (Goettingen, Germany)
Appreciated
4.1 years ago,
created a post with more than 5 votes.
For A: Database Of Essential Genes
Good Answer
4.1 years ago,
created an answer that was upvoted at least 5 times.
For A: Database Of Essential Genes
Appreciated
4.1 years ago,
created a post with more than 5 votes.
For A: Database Of Essential Genes
Scholar
4.2 years ago,
created an answer that has been accepted.
For A: How to read Hi-C result from paper 'Bing Ren'
Teacher
4.3 years ago,
created an answer with at least 3 up-votes.
For A: Greatest Achievements In Bioinformatics Other Than Human Genome
Popular Question
4.5 years ago,
created a question with more than 1,000 views.
For Chromosome Position From Ucsc Genome Browser
Appreciated
5.5 years ago,
created a post with more than 5 votes.
For A: Database Of Essential Genes
Teacher
5.5 years ago,
created an answer with at least 3 up-votes.
For A: Greatest Achievements In Bioinformatics Other Than Human Genome
Good Answer
5.5 years ago,
created an answer that was upvoted at least 5 times.
For A: Database Of Essential Genes
Student
6.0 years ago,
asked a question with at least 3 up-votes.
For Can Biostar Be Affected By Sopa?
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1524 users visited in the last hour