Moderator: Gjain

gravatar for Gjain
Gjain5.1k
Reputation:
5,130
Status:
Trusted
Location:
Göttingen, Germany
Website:
http://www.linkedin.co...
Twitter:
@gauravjain49
Last seen:
6 hours ago
Joined:
6 years, 11 months ago
Email:
g***********@gmail.com

Bioinformatician with extensive experience in genomics and epigenomics. In-depth knowledge of computational biology and machine learning methodologies. 

Specialties: 
• Languages: Python, Perl, R, HTML/HTML5, PHP, Javascript, AJAX, Shell scripting, C/C++, Octave
 
• Big Data: Next generation sequencing, Statistical and bioinformatics data analysis, Machine learning algorithms

• High-throughput Assays: Chromosome Conformation Capture (3C)-based techniques (5C, Hi-C), ChIPseq, RNAseq

• Databases: MySQL, Oracle

• Other: UNIX/Linux, High performance cluster computing (HPCC), Linux server management, Vector graphics/illustration tools

Posts by Gjain

<prev • 311 results • page 1 of 32 • next >
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Comment: C: Chromosome Position From Ucsc Genome Browser
... Yes, you are correct. They internally store everything as the 0-based system and just in the browser, it is 1-based. For more details: [Database/browser start coordinates differ by 1 base][1] I am confused about the start coordinates for items in the refGene table. It looks like you need to ad ...
written 25 days ago by Gjain5.1k
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Comment: C: genome index for miRdeep*
... You're welcome ... happy to help ...
written 4 months ago by Gjain5.1k
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Comment: C: genome index for miRdeep*
... I am happy to help. Please check this link to install ubuntu https://www.youtube.com/watch?v=WzbbwBEjRZY ...
written 5 months ago by Gjain5.1k
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Answer: A: genome index for miRdeep*
... Things you can do: 1. Try to install ubuntu on a virtual box. You then can use mirdeep2 with its full capabilities 2. **CanFam3.1** can be used in mirdeep2.. more details can be found: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0153453 I hope this might get you started. ...
written 5 months ago by Gjain5.1k
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Answer: A: trimming of Rna seq
... You can also look into **DNApi : De novo adapter prediction algorithm for small RNA sequencing data** link: https://github.com/jnktsj/DNApi de novo adapter prediction (iterative) algorithm for small RNA sequencing data. DNApi requires Python (2 or 3) under a Linux/Unix environment. DNApi accept ...
written 5 months ago by Gjain5.1k
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Comment: C: Bioinformatic or bioinformatics?
... Normally it is ***Bioinformatics*** never used bioinformatic as "[informatic][1]" by itself is not used. [Informatics][2], on the other hand, by itself, is a proper term. [1]: https://en.wiktionary.org/wiki/informatic [2]: https://en.wikipedia.org/wiki/Informatics ...
written 7 months ago by Gjain5.1k
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Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
... backup bootable floppy disks :D ...
written 8 months ago by Gjain5.1k
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Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
... -i is your friend here ...
written 8 months ago by Gjain5.1k
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Comment: C: Batch correction for RNA seq data
... Please read the documentation. There are 4 different types of normalization and ERCC is just one of them. ...
written 9 months ago by Gjain5.1k
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Answer: A: Batch correction for RNA seq data
... Hi, Have a look into **RUVSeq: Remove Unwanted Variation from RNA-Seq Data** Normalization of RNA-sequencing (RNA-seq) data has proven essential to ensure accurate inference of expression levels. Here, we show that usual normalization approaches mostly account for sequencing depth and fail to corr ...
written 9 months ago by Gjain5.1k

Latest awards to Gjain

Scholar 5 months ago, created an answer that has been accepted. For A: What Are The Exact Algorithms For Motif Discovery?
Scholar 5 months ago, created an answer that has been accepted. For A: What Are The Exact Algorithms For Motif Discovery?
Great Question 10 months ago, created a question with more than 5,000 views. For Chromosome Position From Ucsc Genome Browser
Scholar 12 months ago, created an answer that has been accepted. For A: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
Appreciated 16 months ago, created a post with more than 5 votes. For A: Database Of Essential Genes
Appreciated 16 months ago, created a post with more than 5 votes. For A: Database Of Essential Genes
Good Answer 16 months ago, created an answer that was upvoted at least 5 times. For A: Database Of Essential Genes
Scholar 16 months ago, created an answer that has been accepted. For A: How to read Hi-C result from paper 'Bing Ren'
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: Greatest Achievements In Bioinformatics Other Than Human Genome
Popular Question 20 months ago, created a question with more than 1,000 views. For Chromosome Position From Ucsc Genome Browser
Appreciated 2.7 years ago, created a post with more than 5 votes. For A: Database Of Essential Genes
Teacher 2.7 years ago, created an answer with at least 3 up-votes. For A: Greatest Achievements In Bioinformatics Other Than Human Genome
Good Answer 2.8 years ago, created an answer that was upvoted at least 5 times. For A: Database Of Essential Genes
Student 3.2 years ago, asked a question with at least 3 up-votes. For Can Biostar Be Affected By Sopa?
Good Answer 3.2 years ago, created an answer that was upvoted at least 5 times. For A: Ethical Issues In Bioinformatics
Appreciated 3.3 years ago, created a post with more than 5 votes. For A: Database Of Essential Genes
Good Answer 3.4 years ago, created an answer that was upvoted at least 5 times. For A: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
Teacher 3.4 years ago, created an answer with at least 3 up-votes. For A: Greatest Achievements In Bioinformatics Other Than Human Genome
Scholar 3.4 years ago, created an answer that has been accepted. For A: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
Good Answer 3.4 years ago, created an answer that was upvoted at least 5 times. For A: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
Appreciated 3.4 years ago, created a post with more than 5 votes. For A: Database Of Essential Genes
Teacher 3.5 years ago, created an answer with at least 3 up-votes. For A: Greatest Achievements In Bioinformatics Other Than Human Genome
Scholar 3.5 years ago, created an answer that has been accepted. For A: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics

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