Moderator: Gjain

gravatar for Gjain
Gjain5.2k
Reputation:
5,170
Status:
Trusted
Location:
Göttingen, Germany
Website:
http://www.linkedin.co...
Twitter:
@gauravjain49
Last seen:
23 hours ago
Joined:
7 years, 1 month ago
Email:
g***********@gmail.com

Bioinformatician with extensive experience in genomics and epigenomics. In-depth knowledge of computational biology and machine learning methodologies. 

Specialties: 
• Languages: Python, Perl, R, HTML/HTML5, PHP, Javascript, AJAX, Shell scripting, C/C++, Octave
 
• Big Data: Next generation sequencing, Statistical and bioinformatics data analysis, Machine learning algorithms

• High-throughput Assays: Chromosome Conformation Capture (3C)-based techniques (5C, Hi-C), ChIPseq, RNAseq

• Databases: MySQL, Oracle

• Other: UNIX/Linux, High performance cluster computing (HPCC), Linux server management, Vector graphics/illustration tools

Posts by Gjain

<prev • 318 results • page 1 of 32 • next >
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Comment: C: What server do you use?
... In that case, talking to the HPC staff about your scheduling problem might help ...
written 23 hours ago by Gjain5.2k
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Comment: C: What server do you use?
... Did you look into the interactive mode? This is what you have done in the past when you login into HPC and log to one node. ....You can use interactive mode to login to the node and run commands there. ...
written 1 day ago by Gjain5.2k
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Comment: C: What server do you use?
... Did you check with the HPC facility about the delays? Maybe the choice of queues, amount of requested cores and memory might be causing the HPC to schedule the job with such a delay. ...
written 2 days ago by Gjain5.2k
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Comment: C: Match multiple columns to find common elements
... Could you please provide some input in the form of a table and the R code on what you have tried so far? ...
written 11 days ago by Gjain5.2k
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Comment: C: Making a heat map more clear
... That is a great link ... thanks a lot ...
written 6 weeks ago by Gjain5.2k
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Comment: C: Making a heat map more clear
... May be you can try pheatmap https://cran.r-project.org/web/packages/pheatmap/pheatmap.pdf ...
written 6 weeks ago by Gjain5.2k
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Answer: A: Compare sets of GO enrichments
... You may want to look at the R package RRHO - The RRHO algorithm allows for the comparison of two gene expression signatures - Each signature is processed as a ranked list based on expression differences between two classes of samples - The signatures can be input either as raw expression data ...
written 7 weeks ago by Gjain5.2k
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Comment: C: Chromosome Position From Ucsc Genome Browser
... Yes, you are correct. They internally store everything as the 0-based system and just in the browser, it is 1-based. For more details: [Database/browser start coordinates differ by 1 base][1] I am confused about the start coordinates for items in the refGene table. It looks like you need to ad ...
written 12 weeks ago by Gjain5.2k
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Comment: C: genome index for miRdeep*
... You're welcome ... happy to help ...
written 6 months ago by Gjain5.2k
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Comment: C: genome index for miRdeep*
... I am happy to help. Please check this link to install ubuntu https://www.youtube.com/watch?v=WzbbwBEjRZY ...
written 7 months ago by Gjain5.2k

Latest awards to Gjain

Appreciated 6 days ago, created a post with more than 5 votes. For A: Database Of Essential Genes
Good Answer 6 days ago, created an answer that was upvoted at least 5 times. For A: Database Of Essential Genes
Scholar 7 months ago, created an answer that has been accepted. For A: What Are The Exact Algorithms For Motif Discovery?
Scholar 7 months ago, created an answer that has been accepted. For A: What Are The Exact Algorithms For Motif Discovery?
Great Question 12 months ago, created a question with more than 5,000 views. For Chromosome Position From Ucsc Genome Browser
Scholar 14 months ago, created an answer that has been accepted. For A: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
Appreciated 18 months ago, created a post with more than 5 votes. For A: Database Of Essential Genes
Appreciated 18 months ago, created a post with more than 5 votes. For A: Database Of Essential Genes
Good Answer 18 months ago, created an answer that was upvoted at least 5 times. For A: Database Of Essential Genes
Scholar 18 months ago, created an answer that has been accepted. For A: How to read Hi-C result from paper 'Bing Ren'
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: Greatest Achievements In Bioinformatics Other Than Human Genome
Popular Question 22 months ago, created a question with more than 1,000 views. For Chromosome Position From Ucsc Genome Browser
Appreciated 2.9 years ago, created a post with more than 5 votes. For A: Database Of Essential Genes
Teacher 2.9 years ago, created an answer with at least 3 up-votes. For A: Greatest Achievements In Bioinformatics Other Than Human Genome
Good Answer 2.9 years ago, created an answer that was upvoted at least 5 times. For A: Database Of Essential Genes
Student 3.4 years ago, asked a question with at least 3 up-votes. For Can Biostar Be Affected By Sopa?
Good Answer 3.4 years ago, created an answer that was upvoted at least 5 times. For A: Ethical Issues In Bioinformatics
Appreciated 3.5 years ago, created a post with more than 5 votes. For A: Database Of Essential Genes
Good Answer 3.5 years ago, created an answer that was upvoted at least 5 times. For A: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
Teacher 3.5 years ago, created an answer with at least 3 up-votes. For A: Greatest Achievements In Bioinformatics Other Than Human Genome
Scholar 3.5 years ago, created an answer that has been accepted. For A: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
Good Answer 3.6 years ago, created an answer that was upvoted at least 5 times. For A: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
Appreciated 3.6 years ago, created a post with more than 5 votes. For A: Database Of Essential Genes

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