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Comment: Comment: Require suggestion for python tools that can implement VCF file into FASTA files
17 months ago by 4galaxy77 2.8k
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Answer: Answer: GWAS and vcf files. Lacking Phenotype
17 months ago by 4galaxy77 2.8k
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Comment: Comment: GWAS and vcf files. Lacking Phenotype
17 months ago by 4galaxy77 2.8k
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1.6k
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Comment: Comment: Require suggestion for python tools that can implement VCF file into FASTA files
18 months ago by 4galaxy77 2.8k
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1.2k
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Comment: Comment: Shannon's Entropy by Sliding Window in R
18 months ago by 4galaxy77 2.8k
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Comment: Comment: Shannon's Entropy by Sliding Window in R
18 months ago by 4galaxy77 2.8k
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Comment: Comment: Are package downgrades a necessary evil in Conda?
18 months ago by 4galaxy77 2.8k
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1.4k
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Are package downgrades a necessary evil in Conda?
environments conda
updated 18 months ago by 142k • written 18 months ago by 2.8k
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1.3k
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Comment: Comment: How to apply bioinformatic in vaccine design?
18 months ago by 4galaxy77 2.8k
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509
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Comment: Comment: How to get the number of significant loci from GWAS
18 months ago by 4galaxy77 2.8k
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Comment: Comment: Opening a VCF.bgz file in python
18 months ago by 4galaxy77 2.8k
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1.7k
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Comment: Comment: Opening a VCF.bgz file in python
18 months ago by 4galaxy77 2.8k
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1.7k
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Comment: Comment: Opening a VCF.bgz file in python
18 months ago by 4galaxy77 2.8k
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Comment: Comment: How to extract specific SNPs from a vcf file and create new a one consisting of
18 months ago by 4galaxy77 2.8k
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2.8k
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Comment: Comment: Filter
18 months ago by 4galaxy77 2.8k
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2.8k
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Answer: Answer: Why doesn't grep work when used on a gzipped (.gz) VCF file
18 months ago by 4galaxy77 2.8k
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697
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Answer: Answer: phasing genotype
19 months ago by 4galaxy77 2.8k
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985
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Comment: Comment: How can I convert plink (.bed, .fam and .bim) fileset to .pgen file format?
19 months ago by 4galaxy77 2.8k
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Comment: Comment: Count missing and non missing values in a VCF file
19 months ago by 4galaxy77 2.8k
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920
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Comment: Comment: Making my python code better
19 months ago by 4galaxy77 2.8k
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1.2k
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Comment: Comment: Where can I find the genetic map for GRCh37 to phase genotypes on SHAPEIT2
19 months ago by 4galaxy77 2.8k
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1
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1.2k
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Comment: Comment: Where can I find the genetic map for GRCh37 to phase genotypes on SHAPEIT2
19 months ago by 4galaxy77 2.8k
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0
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888
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Comment: Comment: bcftools merge doesn't recalculate AF
20 months ago by 4galaxy77 2.8k
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3
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960
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Comment: Comment: downlaod snp from UK Biobank imputed snp chr1 ukb22828 file
20 months ago by 4galaxy77 2.8k
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1.2k
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Answer: Answer: how to calculate %of missing genotype in vcf file
20 months ago by 4galaxy77 2.8k
4
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1
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1.3k
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Comment: Comment: VCF to human friendly form?
20 months ago by 4galaxy77 2.8k
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1
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1.9k
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Answer: Answer: Number of samples and variants in .vcf file
20 months ago by 4galaxy77 2.8k
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2.2k
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Comment: Comment: fast way to get last position in a large indexed VCF?
20 months ago by 4galaxy77 2.8k
4
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2.7k
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Answer: Answer: Can bioinformatics Phds be completely or almost completely done remotely?
20 months ago by 4galaxy77 2.8k
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325
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Lifting over bed file with REF ALT and RSIDs
liftover
20 months ago by 4galaxy77 2.8k
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715
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Comment: Comment: Align plink to fasta
20 months ago by 4galaxy77 2.8k
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2.9k
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Comment: Comment: Commercial software for genomics / NGS / bioinformatics
20 months ago by 4galaxy77 2.8k
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1.6k
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Comment: Comment: How to sort vcf by an INFO column score
20 months ago by 4galaxy77 2.8k
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1
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1.6k
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Comment: Comment: How to sort vcf by an INFO column score
20 months ago by 4galaxy77 2.8k
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1
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715
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Comment: Comment: Stringtie - segmentation fault
20 months ago by 4galaxy77 2.8k
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392
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Answer: Answer: Open human database with RNA sequencing and full genome/exome sequencing (rna-se
20 months ago by 4galaxy77 2.8k
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1.1k
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Answer: Answer: Can you not phase exome data?
21 months ago by 4galaxy77 2.8k
2
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1
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1.4k
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Answer: Answer: PlotPCA shows small plot in plot section of R studio
21 months ago by 4galaxy77 2.8k
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Comment: Comment: Impute genotype probabilities with BEAGLE
21 months ago by 4galaxy77 2.8k
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1
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2.3k
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Comment: Comment: Impute genotype probabilities with BEAGLE
21 months ago by 4galaxy77 2.8k
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1
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2.3k
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Comment: Comment: Impute genotype probabilities with BEAGLE
21 months ago by 4galaxy77 2.8k
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2
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882
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Comment: Comment: Merge 2 imputation reference panels
21 months ago by 4galaxy77 2.8k
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1.6k
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Comment: Comment: Memory Issue while doing single cell seq analysis
21 months ago by 4galaxy77 2.8k
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Comment: Comment: Why isn't GWAS used in oncology?
21 months ago by 4galaxy77 2.8k
1
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1
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443
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Converting RSIDs in the HLA region (e.g.) HLA-A*:01:01g-B*08:01 format?
SNP HLA rsid
updated 21 months ago by 142k • written 21 months ago by 2.8k
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595
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Comment: Comment: What does adjusted p value mean in GO overrepresentation analysis? [clusterProfi
21 months ago by 4galaxy77 2.8k
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0
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947
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Comment: Comment: The problem occurs when I use SHAPEIT, the problem is as follows
21 months ago by 4galaxy77 2.8k
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1
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947
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Comment: Comment: The problem occurs when I use SHAPEIT, the problem is as follows
21 months ago by 4galaxy77 2.8k
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1
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558
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Comment: Comment: Downstream Analysis of snvs
21 months ago by 4galaxy77 2.8k
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876
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Comment: Comment: How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
21 months ago by 4galaxy77 2.8k
441 results • Page 2 of 9
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