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Comment:
Comment: Require suggestion for python tools that can implement VCF file into FASTA files
17 months ago by
4galaxy77
2.8k
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0
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1.4k
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Answer:
Answer: GWAS and vcf files. Lacking Phenotype
17 months ago by
4galaxy77
2.8k
0
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1
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1.4k
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Comment:
Comment: GWAS and vcf files. Lacking Phenotype
17 months ago by
4galaxy77
2.8k
0
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1
reply
1.6k
views
Comment:
Comment: Require suggestion for python tools that can implement VCF file into FASTA files
17 months ago by
4galaxy77
2.8k
0
votes
1
reply
1.1k
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Comment:
Comment: Shannon's Entropy by Sliding Window in R
17 months ago by
4galaxy77
2.8k
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0
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1.1k
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Comment:
Comment: Shannon's Entropy by Sliding Window in R
17 months ago by
4galaxy77
2.8k
0
votes
1
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1.3k
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Comment:
Comment: Are package downgrades a necessary evil in Conda?
17 months ago by
4galaxy77
2.8k
6
votes
7
replies
1.3k
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Are package downgrades a necessary evil in Conda?
environments
conda
updated 17 months ago by
GenoMax
141k • written 17 months ago by
4galaxy77
2.8k
2
votes
0
replies
1.3k
views
Comment:
Comment: How to apply bioinformatic in vaccine design?
17 months ago by
4galaxy77
2.8k
1
vote
1
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502
views
Comment:
Comment: How to get the number of significant loci from GWAS
17 months ago by
4galaxy77
2.8k
0
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0
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1.6k
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Comment:
Comment: Opening a VCF.bgz file in python
17 months ago by
4galaxy77
2.8k
0
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1
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1.6k
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Comment:
Comment: Opening a VCF.bgz file in python
17 months ago by
4galaxy77
2.8k
0
votes
1
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1.6k
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Comment:
Comment: Opening a VCF.bgz file in python
17 months ago by
4galaxy77
2.8k
1
vote
0
replies
994
views
Comment:
Comment: How to extract specific SNPs from a vcf file and create new a one consisting of
18 months ago by
4galaxy77
2.8k
2
votes
0
replies
2.7k
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Comment:
Comment: Filter
18 months ago by
4galaxy77
2.8k
3
votes
1
reply
2.7k
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Answer:
Answer: Why doesn't grep work when used on a gzipped (.gz) VCF file
18 months ago by
4galaxy77
2.8k
1
vote
0
replies
682
views
Answer:
Answer: phasing genotype
18 months ago by
4galaxy77
2.8k
1
vote
0
replies
971
views
Comment:
Comment: How can I convert plink (.bed, .fam and .bim) fileset to .pgen file format?
18 months ago by
4galaxy77
2.8k
1
vote
0
replies
2.1k
views
Comment:
Comment: Count missing and non missing values in a VCF file
18 months ago by
4galaxy77
2.8k
1
vote
0
replies
909
views
Comment:
Comment: Making my python code better
19 months ago by
4galaxy77
2.8k
2
votes
1
reply
1.1k
views
Comment:
Comment: Where can I find the genetic map for GRCh37 to phase genotypes on SHAPEIT2
19 months ago by
4galaxy77
2.8k
0
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1
reply
1.1k
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Comment:
Comment: Where can I find the genetic map for GRCh37 to phase genotypes on SHAPEIT2
19 months ago by
4galaxy77
2.8k
0
votes
0
replies
864
views
Comment:
Comment: bcftools merge doesn't recalculate AF
19 months ago by
4galaxy77
2.8k
0
votes
3
replies
932
views
Comment:
Comment: downlaod snp from UK Biobank imputed snp chr1 ukb22828 file
19 months ago by
4galaxy77
2.8k
0
votes
0
replies
1.1k
views
Answer:
Answer: how to calculate %of missing genotype in vcf file
19 months ago by
4galaxy77
2.8k
4
votes
1
reply
1.3k
views
Comment:
Comment: VCF to human friendly form?
19 months ago by
4galaxy77
2.8k
1
vote
1
reply
1.8k
views
Answer:
Answer: Number of samples and variants in .vcf file
19 months ago by
4galaxy77
2.8k
0
votes
1
reply
2.2k
views
Comment:
Comment: fast way to get last position in a large indexed VCF?
19 months ago by
4galaxy77
2.8k
4
votes
1
reply
2.6k
views
Answer:
Answer: Can bioinformatics Phds be completely or almost completely done remotely?
19 months ago by
4galaxy77
2.8k
0
votes
0
replies
319
views
Lifting over bed file with REF ALT and RSIDs
liftover
19 months ago by
4galaxy77
2.8k
0
votes
0
replies
698
views
Comment:
Comment: Align plink to fasta
20 months ago by
4galaxy77
2.8k
1
vote
1
reply
2.8k
views
Comment:
Comment: Commercial software for genomics / NGS / bioinformatics
20 months ago by
4galaxy77
2.8k
0
votes
0
replies
1.6k
views
Comment:
Comment: How to sort vcf by an INFO column score
20 months ago by
4galaxy77
2.8k
0
votes
1
reply
1.6k
views
Comment:
Comment: How to sort vcf by an INFO column score
20 months ago by
4galaxy77
2.8k
0
votes
1
reply
703
views
Comment:
Comment: Stringtie - segmentation fault
20 months ago by
4galaxy77
2.8k
1
vote
0
replies
386
views
Answer:
Answer: Open human database with RNA sequencing and full genome/exome sequencing (rna-se
20 months ago by
4galaxy77
2.8k
1
vote
1
reply
1.1k
views
Answer:
Answer: Can you not phase exome data?
20 months ago by
4galaxy77
2.8k
2
votes
1
reply
1.4k
views
Answer:
Answer: PlotPCA shows small plot in plot section of R studio
20 months ago by
4galaxy77
2.8k
0
votes
0
replies
2.3k
views
Comment:
Comment: Impute genotype probabilities with BEAGLE
20 months ago by
4galaxy77
2.8k
0
votes
1
reply
2.3k
views
Comment:
Comment: Impute genotype probabilities with BEAGLE
20 months ago by
4galaxy77
2.8k
0
votes
1
reply
2.3k
views
Comment:
Comment: Impute genotype probabilities with BEAGLE
20 months ago by
4galaxy77
2.8k
1
vote
2
replies
859
views
Comment:
Comment: Merge 2 imputation reference panels
20 months ago by
4galaxy77
2.8k
0
votes
0
replies
1.5k
views
Comment:
Comment: Memory Issue while doing single cell seq analysis
20 months ago by
4galaxy77
2.8k
0
votes
0
replies
2.4k
views
Comment:
Comment: Why isn't GWAS used in oncology?
20 months ago by
4galaxy77
2.8k
1
vote
1
reply
435
views
Converting RSIDs in the HLA region (e.g.) HLA-A*:01:01g-B*08:01 format?
SNP
HLA
rsid
updated 20 months ago by
GenoMax
141k • written 20 months ago by
4galaxy77
2.8k
0
votes
0
replies
586
views
Comment:
Comment: What does adjusted p value mean in GO overrepresentation analysis? [clusterProfi
21 months ago by
4galaxy77
2.8k
0
votes
0
replies
937
views
Comment:
Comment: The problem occurs when I use SHAPEIT, the problem is as follows
21 months ago by
4galaxy77
2.8k
0
votes
1
reply
937
views
Comment:
Comment: The problem occurs when I use SHAPEIT, the problem is as follows
21 months ago by
4galaxy77
2.8k
0
votes
1
reply
550
views
Comment:
Comment: Downstream Analysis of snvs
21 months ago by
4galaxy77
2.8k
0
votes
0
replies
862
views
Comment:
Comment: How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
21 months ago by
4galaxy77
2.8k
441 results • Page
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