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Comment: Comment: Require suggestion for python tools that can implement VCF file into FASTA files
2.0 years ago by 4galaxy77 2.9k
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1.8k
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Answer: Answer: GWAS and vcf files. Lacking Phenotype
2.0 years ago by 4galaxy77 2.9k
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1.8k
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Comment: Comment: GWAS and vcf files. Lacking Phenotype
2.0 years ago by 4galaxy77 2.9k
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1.9k
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Comment: Comment: Require suggestion for python tools that can implement VCF file into FASTA files
2.0 years ago by 4galaxy77 2.9k
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1.4k
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Comment: Comment: Shannon's Entropy by Sliding Window in R
2.0 years ago by 4galaxy77 2.9k
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Comment: Comment: Shannon's Entropy by Sliding Window in R
2.0 years ago by 4galaxy77 2.9k
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1.9k
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Comment: Comment: Are package downgrades a necessary evil in Conda?
2.0 years ago by 4galaxy77 2.9k
6
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7
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1.9k
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Are package downgrades a necessary evil in Conda?
environments conda
updated 2.0 years ago by 147k • written 2.0 years ago by 2.9k
2
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0
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1.5k
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Comment: Comment: How to apply bioinformatic in vaccine design?
2.1 years ago by 4galaxy77 2.9k
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1
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591
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Comment: Comment: How to get the number of significant loci from GWAS
2.1 years ago by 4galaxy77 2.9k
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Comment: Comment: Opening a VCF.bgz file in python
2.1 years ago by 4galaxy77 2.9k
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2.1k
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Comment: Comment: Opening a VCF.bgz file in python
2.1 years ago by 4galaxy77 2.9k
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1
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2.1k
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Comment: Comment: Opening a VCF.bgz file in python
2.1 years ago by 4galaxy77 2.9k
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1.2k
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Comment: Comment: How to extract specific SNPs from a vcf file and create new a one consisting of
2.1 years ago by 4galaxy77 2.9k
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3.4k
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Comment: Comment: Filter
2.1 years ago by 4galaxy77 2.9k
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1
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3.4k
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Answer: Answer: Why doesn't grep work when used on a gzipped (.gz) VCF file
2.1 years ago by 4galaxy77 2.9k
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0
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828
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Answer: Answer: phasing genotype
2.1 years ago by 4galaxy77 2.9k
1
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0
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1.1k
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Comment: Comment: How can I convert plink (.bed, .fam and .bim) fileset to .pgen file format?
2.1 years ago by 4galaxy77 2.9k
1
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0
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3.0k
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Comment: Comment: Count missing and non missing values in a VCF file
2.1 years ago by 4galaxy77 2.9k
1
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0
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1.1k
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Comment: Comment: Making my python code better
2.2 years ago by 4galaxy77 2.9k
2
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1
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1.5k
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Comment: Comment: Where can I find the genetic map for GRCh37 to phase genotypes on SHAPEIT2
2.2 years ago by 4galaxy77 2.9k
0
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1
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1.5k
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Comment: Comment: Where can I find the genetic map for GRCh37 to phase genotypes on SHAPEIT2
2.2 years ago by 4galaxy77 2.9k
0
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0
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1.1k
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Comment: Comment: bcftools merge doesn't recalculate AF
2.2 years ago by 4galaxy77 2.9k
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3
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1.2k
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Comment: Comment: downlaod snp from UK Biobank imputed snp chr1 ukb22828 file
2.2 years ago by 4galaxy77 2.9k
0
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0
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1.4k
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Answer: Answer: how to calculate %of missing genotype in vcf file
2.2 years ago by 4galaxy77 2.9k
4
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1
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1.7k
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Comment: Comment: VCF to human friendly form?
2.2 years ago by 4galaxy77 2.9k
1
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1
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2.9k
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Answer: Answer: Number of samples and variants in .vcf file
2.2 years ago by 4galaxy77 2.9k
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1
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2.9k
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Comment: Comment: fast way to get last position in a large indexed VCF?
2.2 years ago by 4galaxy77 2.9k
4
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1
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3.3k
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Answer: Answer: Can bioinformatics Phds be completely or almost completely done remotely?
2.2 years ago by 4galaxy77 2.9k
0
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0
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400
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Lifting over bed file with REF ALT and RSIDs
liftover
2.2 years ago by 4galaxy77 2.9k
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0
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899
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Comment: Comment: Align plink to fasta
2.2 years ago by 4galaxy77 2.9k
1
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1
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3.5k
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Comment: Comment: Commercial software for genomics / NGS / bioinformatics
2.2 years ago by 4galaxy77 2.9k
0
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1.9k
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Comment: Comment: How to sort vcf by an INFO column score
2.3 years ago by 4galaxy77 2.9k
0
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1
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1.9k
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Comment: Comment: How to sort vcf by an INFO column score
2.3 years ago by 4galaxy77 2.9k
0
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1
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848
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Comment: Comment: Stringtie - segmentation fault
2.3 years ago by 4galaxy77 2.9k
1
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0
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461
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Answer: Answer: Open human database with RNA sequencing and full genome/exome sequencing (rna-se
2.3 years ago by 4galaxy77 2.9k
1
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1
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1.5k
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Answer: Answer: Can you not phase exome data?
2.3 years ago by 4galaxy77 2.9k
2
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1
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1.7k
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Answer: Answer: PlotPCA shows small plot in plot section of R studio
2.3 years ago by 4galaxy77 2.9k
0
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0
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2.8k
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Comment: Comment: Impute genotype probabilities with BEAGLE
2.3 years ago by 4galaxy77 2.9k
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1
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2.8k
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Comment: Comment: Impute genotype probabilities with BEAGLE
2.3 years ago by 4galaxy77 2.9k
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1
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2.8k
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Comment: Comment: Impute genotype probabilities with BEAGLE
2.3 years ago by 4galaxy77 2.9k
1
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2
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1.0k
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Comment: Comment: Merge 2 imputation reference panels
2.3 years ago by 4galaxy77 2.9k
0
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0
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1.9k
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Comment: Comment: Memory Issue while doing single cell seq analysis
2.3 years ago by 4galaxy77 2.9k
0
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0
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2.9k
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Comment: Comment: Why isn't GWAS used in oncology?
2.3 years ago by 4galaxy77 2.9k
1
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1
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528
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Converting RSIDs in the HLA region (e.g.) HLA-A*:01:01g-B*08:01 format?
SNP HLA rsid
updated 2.3 years ago by 147k • written 2.3 years ago by 2.9k
0
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0
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671
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Comment: Comment: What does adjusted p value mean in GO overrepresentation analysis? [clusterProfi
2.3 years ago by 4galaxy77 2.9k
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0
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1.1k
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Comment: Comment: The problem occurs when I use SHAPEIT, the problem is as follows
2.3 years ago by 4galaxy77 2.9k
0
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1
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1.1k
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Comment: Comment: The problem occurs when I use SHAPEIT, the problem is as follows
2.3 years ago by 4galaxy77 2.9k
0
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1
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664
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Comment: Comment: Downstream Analysis of snvs
2.4 years ago by 4galaxy77 2.9k
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Comment: Comment: How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
2.4 years ago by 4galaxy77 2.9k
439 results • Page 2 of 9
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