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Comment: Comment: Strange pattern of uneven read count distribution
11 months ago by d-cameron ★ 3.0k
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1.3k
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Answer: Answer: Strange pattern of uneven read count distribution
11 months ago by d-cameron ★ 3.0k
4
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5
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5.8k
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Tool: GRIDSS: the Genomic Rearrangement IDentification Software Suite
Assembly Structural-Variation Variant-Calling
updated 17 months ago by ▴ 520 • written 8.7 years ago by ★ 3.0k
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999
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Comment: Comment: Deep Sequencing vs Shallow Sequencing but repeated several times
20 months ago by d-cameron ★ 3.0k
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1
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950
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Answer: Answer: I want to add a human gene sequence to a mouse reference genome
22 months ago by d-cameron ★ 3.0k
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2.1k
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Comment: Comment: How to whole genome assemble when I have three references
22 months ago by d-cameron ★ 3.0k
0
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1
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2.1k
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Comment: Comment: How to whole genome assemble when I have three references
22 months ago by d-cameron ★ 3.0k
1
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0
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2.1k
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Comment: Comment: How to whole genome assemble when I have three references
22 months ago by d-cameron ★ 3.0k
0
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1
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2.1k
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Comment: Comment: How to whole genome assemble when I have three references
22 months ago by d-cameron ★ 3.0k
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0
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1.0k
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Answer: Answer: How to find positions with higher depth relative to their surroundings
2.1 years ago by d-cameron ★ 3.0k
1
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0
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2.2k
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Answer: Answer: Importance of Data Structures for Bioinformatics?
2.1 years ago by d-cameron ★ 3.0k
1
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1
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3.9k
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Answer: Answer: Converting custom VCF to standard VCF
2.1 years ago by d-cameron ★ 3.0k
1
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0
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1.5k
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Answer: Answer: CNV benchmarking
2.2 years ago by d-cameron ★ 3.0k
3
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1
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9.1k
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Answer: Answer: Is there a file format better suited for the era of pangenomics than the .vcf? W
2.4 years ago by d-cameron ★ 3.0k
3
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0
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839
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Answer: Answer: unmapped reads
2.5 years ago by d-cameron ★ 3.0k
1
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1
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2.9k
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Answer: Answer: samtools index: Numerical result out of range for both .bai and .csi
2.9 years ago by d-cameron ★ 3.0k
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0
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3.0k
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Comment: Comment: paired end mapping with one end being unique and the other end multiple
3.1 years ago by d-cameron ★ 3.0k
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1
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2.9k
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Comment: Comment: Unaligned Reads From Bowtie2
3.1 years ago by d-cameron ★ 3.0k
1
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1
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2.9k
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Answer: Answer: Unaligned Reads From Bowtie2
3.1 years ago by d-cameron ★ 3.0k
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0
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4.2k
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Comment: Comment: Extracting only soft/hard clipped reads from a bam file
3.1 years ago by d-cameron ★ 3.0k
0
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1
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4.2k
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Answer: Answer: Extracting only soft/hard clipped reads from a bam file
3.1 years ago by d-cameron ★ 3.0k
3
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0
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2.6k
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Answer: Answer: VCF to human friendly form?
3.1 years ago by d-cameron ★ 3.0k
0
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1
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1.3k
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Answer: Answer: Sampling short reads from a library with long reads
3.2 years ago by d-cameron ★ 3.0k
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0
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1.7k
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Comment: Comment: SV with identical start and end positions
3.2 years ago by d-cameron ★ 3.0k
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0
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1.7k
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Answer: Answer: SV with identical start and end positions
3.2 years ago by d-cameron ★ 3.0k
0
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2
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1.7k
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Comment: Comment: SV with identical start and end positions
3.2 years ago by d-cameron ★ 3.0k
5
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0
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1.5k
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Answer: Answer: PC for bioinformatics
3.2 years ago by d-cameron ★ 3.0k
1
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1
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1.7k
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Answer: Answer: Distinguishing records for reads in a pair in a SAM file
3.2 years ago by d-cameron ★ 3.0k
0
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1
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3.8k
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Comment: Comment: AF = 0.5 in chrX, VCF of a male
3.2 years ago by d-cameron ★ 3.0k
1
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1
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2.2k
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Answer: Answer: Circos plot from SV data of WES samples
3.2 years ago by d-cameron ★ 3.0k
0
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1
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4.4k
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Comment: Comment: Tabix '[E::get_intv] Failed to parse TBX_VCF' error
3.3 years ago by d-cameron ★ 3.0k
0
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0
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2.0k
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Answer: Answer: How to extract fasta subsequences from a multiline fasta file which has very lon
3.4 years ago by d-cameron ★ 3.0k
1
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0
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1.2k
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Answer: Answer: What are the biggest sets of individual-level sequence-based variant data?
3.4 years ago by d-cameron ★ 3.0k
0
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0
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1.2k
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Answer: Answer: Is it possible to infer whether a patient is with homozygous with the alternativ
3.4 years ago by d-cameron ★ 3.0k
2
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1
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1.2k
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Answer: Answer: Unreasonable allele frequency (AF) found in my sample VCF file
3.4 years ago by d-cameron ★ 3.0k
0
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0
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869
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Comment: Comment: How to bin how many alignments a read maps
3.4 years ago by d-cameron ★ 3.0k
1
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0
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2.3k
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Answer: Answer: computing chromothripsis on cancer genomes
3.5 years ago by d-cameron ★ 3.0k
0
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0
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800
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Comment: Comment: Detect a sequence without assembling... and counting number of reads?
3.5 years ago by d-cameron ★ 3.0k
3
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2
replies
3.0k
views
Comment: Comment: paired end mapping with one end being unique and the other end multiple
3.5 years ago by d-cameron ★ 3.0k
2
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0
replies
3.0k
views
Comment: Comment: paired end mapping with one end being unique and the other end multiple
3.5 years ago by d-cameron ★ 3.0k
1
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0
replies
1.4k
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Comment: Comment: Calling variants after using different read alignment programs
3.6 years ago by d-cameron ★ 3.0k
2
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1
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1.4k
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Answer: Answer: Calling variants after using different read alignment programs
3.6 years ago by d-cameron ★ 3.0k
0
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0
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1.0k
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Answer: Answer: Tumor phylogeny: WGS or deep WES?
3.6 years ago by d-cameron ★ 3.0k
1
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0
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4.5k
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Comment: Comment: Are not all duplicated reads removed when applying removal duplicated algorithms
3.6 years ago by d-cameron ★ 3.0k
1
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1
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4.5k
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Answer: Answer: Are not all duplicated reads removed when applying removal duplicated algorithms
3.6 years ago by d-cameron ★ 3.0k
1
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0
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985
views
Answer: Answer: New VCF Header (schema) Parser---Please Break!!!
3.6 years ago by d-cameron ★ 3.0k
2
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0
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1.8k
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Answer: Answer: QUAL in VCF file
3.6 years ago by d-cameron ★ 3.0k
1
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0
replies
1.5k
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Answer: Answer: Identifying breakpoints of split reads in SAM files
3.6 years ago by d-cameron ★ 3.0k
2
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0
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9.3k
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Comment: Comment: Structural Variants (SV) Manta output interpretation: MantaBND and translocation
3.6 years ago by d-cameron ★ 3.0k
5
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2
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9.3k
views
Answer: Answer: Structural Variants (SV) Manta output interpretation: MantaBND and translocation
3.7 years ago by d-cameron ★ 3.0k
327 results • Page 1 of 7
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