Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
0
replies
3.0k
views
Answer: A: somatic calls by somatic SNV caller differ a lot, when comparing with cancer min
8.3 years ago by d-cameron ★ 3.0k
0
votes
0
replies
3.2k
views
Comment: C: Splitting Individual FASTA/FASTQ reads from NGS data
8.4 years ago by d-cameron ★ 3.0k
0
votes
0
replies
3.7k
views
Comment: C: Are there NGS-based CNV callers that utilise allele frequency?
8.4 years ago by d-cameron ★ 3.0k
5
votes
1
reply
5.5k
views
Answer: A: Are these false somatic variants? Visual inspection with IGV
8.5 years ago by d-cameron ★ 3.0k
0
votes
0
replies
3.5k
views
Comment: C: What tools do you suggest for resolving large insertions?
8.5 years ago by d-cameron ★ 3.0k
1
vote
2
replies
3.5k
views
Comment: C: What tools do you suggest for resolving large insertions?
8.5 years ago by d-cameron ★ 3.0k
0
votes
0
replies
3.5k
views
Comment: C: What tools do you suggest for resolving large insertions?
8.5 years ago by d-cameron ★ 3.0k
1
vote
2
replies
3.5k
views
Answer: A: What tools do you suggest for resolving large insertions?
8.5 years ago by d-cameron ★ 3.0k
1
vote
0
replies
4.2k
views
Answer: A: Detection of CNVs from vcf file
8.5 years ago by d-cameron ★ 3.0k
0
votes
0
replies
2.6k
views
Comment: C: How to Define Structural Variation Breakpoint Positions?
8.5 years ago by d-cameron ★ 3.0k
3
votes
1
reply
2.6k
views
Answer: A: How to Define Structural Variation Breakpoint Positions?
8.5 years ago by d-cameron ★ 3.0k
2
votes
1
reply
3.1k
views
Comment: C: Filetring in vcf files
8.5 years ago by d-cameron ★ 3.0k
2
votes
0
replies
3.1k
views
Comment: C: Filetring in vcf files
8.5 years ago by d-cameron ★ 3.0k
0
votes
1
reply
3.1k
views
Answer: A: Filetring in vcf files
8.5 years ago by d-cameron ★ 3.0k
0
votes
0
replies
3.1k
views
Comment: C: Is there any robust way to convert VCFs to SQL (for easier comparisons) in R or
8.6 years ago by d-cameron ★ 3.0k
1
vote
0
replies
7.7k
views
Comment: C: annotation of SV (Structural Variants)
8.6 years ago by d-cameron ★ 3.0k
2
votes
0
replies
7.7k
views
Comment: C: annotation of SV (Structural Variants)
8.6 years ago by d-cameron ★ 3.0k
6
votes
0
replies
7.7k
views
Answer: A: annotation of SV (Structural Variants)
8.6 years ago by d-cameron ★ 3.0k
0
votes
1
reply
2.5k
views
Comment: C: Base call from BAM file
8.6 years ago by d-cameron ★ 3.0k
0
votes
0
replies
5.1k
views
Comment: C: How is the FM-index built for multiple entries of a fasta file?
8.6 years ago by d-cameron ★ 3.0k
0
votes
0
replies
5.1k
views
Answer: A: How is the FM-index built for multiple entries of a fasta file?
8.6 years ago by d-cameron ★ 3.0k
3
votes
0
replies
3.3k
views
Answer: A: somatic variant calling with no germline sample
8.6 years ago by d-cameron ★ 3.0k
8
votes
1
reply
4.0k
views
Answer: A: filtering structural variants from normal-tumor pairs (whole-genome sequencing)
8.6 years ago by d-cameron ★ 3.0k
0
votes
0
replies
3.0k
views
Comment: C: What are the sematics of containing bwa split read alignments?
8.6 years ago by d-cameron ★ 3.0k
3
votes
1
reply
4.2k
views
Comment: C: Deciding on a Variant Caller
8.7 years ago by d-cameron ★ 3.0k
3
votes
0
replies
4.2k
views
Answer: A: Deciding on a Variant Caller
8.7 years ago by d-cameron ★ 3.0k
0
votes
0
replies
14k
views
Answer: A: memory consumption of bwa-mem
8.7 years ago by d-cameron ★ 3.0k
1
vote
0
replies
5.1k
views
Answer: A: NGS overlapping reads
8.7 years ago by d-cameron ★ 3.0k
2
votes
0
replies
1.8k
views
Answer: A: bed file in bad format
8.7 years ago by d-cameron ★ 3.0k
0
votes
1
reply
2.8k
views
Comment: C: structural annotation of sequence
8.7 years ago by d-cameron ★ 3.0k
3
votes
1
reply
2.8k
views
Answer: A: structural annotation of sequence
8.7 years ago by d-cameron ★ 3.0k
1
vote
0
replies
5.8k
views
Comment: C: GRIDSS: the Genomic Rearrangement IDentification Software Suite
8.7 years ago by d-cameron ★ 3.0k
3
votes
2
replies
8.4k
views
Answer: A: NGS data simulation: VarSim or BAMSurgeon?
8.7 years ago by d-cameron ★ 3.0k
0
votes
0
replies
2.8k
views
Comment: C: Modernising the FASTQ Format
8.7 years ago by d-cameron ★ 3.0k
3
votes
1
reply
2.8k
views
Answer: A: Modernising the FASTQ Format
8.7 years ago by d-cameron ★ 3.0k
0
votes
0
replies
2.4k
views
Answer: A: How to truncate the short reads to 30x coverage from 60x coverage
8.7 years ago by d-cameron ★ 3.0k
0
votes
0
replies
2.4k
views
Comment: C: How to truncate the short reads to 30x coverage from 60x coverage
8.7 years ago by d-cameron ★ 3.0k
1
vote
0
replies
2.4k
views
Comment: C: How to truncate the short reads to 30x coverage from 60x coverage
8.7 years ago by d-cameron ★ 3.0k
0
votes
1
reply
2.4k
views
Comment: C: How to truncate the short reads to 30x coverage from 60x coverage
8.7 years ago by d-cameron ★ 3.0k
1
vote
1
reply
4.6k
views
Comment: C: How to print the lines exclusively from unknown columns with missing(undef) valu
8.7 years ago by d-cameron ★ 3.0k
0
votes
0
replies
2.8k
views
Comment: C: Is De-Bruijn graph only the best approach for assembling short reads from 2nd ge
8.8 years ago by d-cameron ★ 3.0k
0
votes
0
replies
5.2k
views
Comment: C: Warning: Could not find FASTA file /home/praveenkumarr/rice_default/bwt/genome/g
8.8 years ago by d-cameron ★ 3.0k
0
votes
1
reply
5.2k
views
Comment: C: Warning: Could not find FASTA file /home/praveenkumarr/rice_default/bwt/genome/g
8.8 years ago by d-cameron ★ 3.0k
0
votes
0
replies
4.1k
views
Comment: C: Whole Genome Sequencing and structural variation identification in human..
8.8 years ago by d-cameron ★ 3.0k
0
votes
1
reply
5.2k
views
Comment: C: Warning: Could not find FASTA file /home/praveenkumarr/rice_default/bwt/genome/g
8.8 years ago by d-cameron ★ 3.0k
2
votes
0
replies
4.1k
views
Answer: A: Whole Genome Sequencing and structural variation identification in human..
8.8 years ago by d-cameron ★ 3.0k
0
votes
1
reply
6.4k
views
Comment: C: Viewing chimeric reads on IGV
8.8 years ago by d-cameron ★ 3.0k
0
votes
0
replies
1.6k
views
Answer: A: What software tools can merge FASTQs and BAMs (SAMs) separately ?
8.8 years ago by d-cameron ★ 3.0k
0
votes
0
replies
4.0k
views
Comment: C: Tools to detect structural variation in PacBio "long" reads
8.8 years ago by d-cameron ★ 3.0k
0
votes
1
reply
2.5k
views
Comment: C: differential expression of human sample showing 63000 genes in output
8.8 years ago by d-cameron ★ 3.0k
327 results • Page 6 of 7
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6