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Tool: GRIDSS: the Genomic Rearrangement IDentification Software Suite
Assembly Structural-Variation Variant-Calling
updated 1 day ago by ▴ 520 • written 7.2 years ago by ★ 2.9k
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Comment: Comment: Deep Sequencing vs Shallow Sequencing but repeated several times
3 months ago by d-cameron ★ 2.9k
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Answer: Answer: I want to add a human gene sequence to a mouse reference genome
4 months ago by d-cameron ★ 2.9k
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833
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Comment: Comment: How to whole genome assemble when I have three references
4 months ago by d-cameron ★ 2.9k
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833
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Comment: Comment: How to whole genome assemble when I have three references
5 months ago by d-cameron ★ 2.9k
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833
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Comment: Comment: How to whole genome assemble when I have three references
5 months ago by d-cameron ★ 2.9k
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833
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Comment: Comment: How to whole genome assemble when I have three references
5 months ago by d-cameron ★ 2.9k
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508
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Answer: Answer: How to find positions with higher depth relative to their surroundings
7 months ago by d-cameron ★ 2.9k
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Answer: Answer: Importance of Data Structures for Bioinformatics?
7 months ago by d-cameron ★ 2.9k
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Answer: Answer: Converting custom VCF to standard VCF
8 months ago by d-cameron ★ 2.9k
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725
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Answer: Answer: CNV benchmarking
9 months ago by d-cameron ★ 2.9k
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Answer: Answer: Is there a file format better suited for the era of pangenomics than the .vcf? W
11 months ago by d-cameron ★ 2.9k
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Answer: Answer: unmapped reads
12 months ago by d-cameron ★ 2.9k
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Answer: Answer: samtools index: Numerical result out of range for both .bai and .csi
18 months ago by d-cameron ★ 2.9k
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Comment: Comment: paired end mapping with one end being unique and the other end multiple
19 months ago by d-cameron ★ 2.9k
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1.7k
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Comment: Comment: Unaligned Reads From Bowtie2
19 months ago by d-cameron ★ 2.9k
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Answer: Answer: Unaligned Reads From Bowtie2
19 months ago by d-cameron ★ 2.9k
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Comment: Comment: Extracting only soft/hard clipped reads from a bam file
19 months ago by d-cameron ★ 2.9k
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Answer: Answer: Extracting only soft/hard clipped reads from a bam file
19 months ago by d-cameron ★ 2.9k
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Answer: Answer: VCF to human friendly form?
20 months ago by d-cameron ★ 2.9k
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685
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Answer: Answer: Sampling short reads from a library with long reads
21 months ago by d-cameron ★ 2.9k
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963
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Comment: Comment: SV with identical start and end positions
21 months ago by d-cameron ★ 2.9k
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963
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Answer: Answer: SV with identical start and end positions
21 months ago by d-cameron ★ 2.9k
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2
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963
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Comment: Comment: SV with identical start and end positions
21 months ago by d-cameron ★ 2.9k
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Answer: Answer: PC for bioinformatics
21 months ago by d-cameron ★ 2.9k
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Answer: Answer: Distinguishing records for reads in a pair in a SAM file
21 months ago by d-cameron ★ 2.9k
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Comment: Comment: AF = 0.5 in chrX, VCF of a male
21 months ago by d-cameron ★ 2.9k
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Answer: Answer: Circos plot from SV data of WES samples
21 months ago by d-cameron ★ 2.9k
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Comment: Comment: Tabix '[E::get_intv] Failed to parse TBX_VCF' error
21 months ago by d-cameron ★ 2.9k
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1.1k
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Answer: Answer: How to extract fasta subsequences from a multiline fasta file which has very lon
23 months ago by d-cameron ★ 2.9k
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648
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Answer: Answer: What are the biggest sets of individual-level sequence-based variant data?
23 months ago by d-cameron ★ 2.9k
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Answer: Answer: Is it possible to infer whether a patient is with homozygous with the alternativ
23 months ago by d-cameron ★ 2.9k
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765
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Answer: Answer: Unreasonable allele frequency (AF) found in my sample VCF file
23 months ago by d-cameron ★ 2.9k
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429
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Comment: Comment: How to bin how many alignments a read maps
24 months ago by d-cameron ★ 2.9k
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Answer: Answer: computing chromothripsis on cancer genomes
24 months ago by d-cameron ★ 2.9k
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450
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Comment: Comment: Detect a sequence without assembling... and counting number of reads?
2.0 years ago by d-cameron ★ 2.9k
3
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2
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1.6k
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Comment: Comment: paired end mapping with one end being unique and the other end multiple
2.0 years ago by d-cameron ★ 2.9k
2
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0
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1.6k
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Comment: Comment: paired end mapping with one end being unique and the other end multiple
2.0 years ago by d-cameron ★ 2.9k
1
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0
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783
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Comment: Comment: Calling variants after using different read alignment programs
2.1 years ago by d-cameron ★ 2.9k
2
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1
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783
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Answer: Answer: Calling variants after using different read alignment programs
2.1 years ago by d-cameron ★ 2.9k
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627
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Answer: Answer: Tumor phylogeny: WGS or deep WES?
2.1 years ago by d-cameron ★ 2.9k
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2.1k
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Comment: Comment: Are not all duplicated reads removed when applying removal duplicated algorithms
2.2 years ago by d-cameron ★ 2.9k
1
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1
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2.1k
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Answer: Answer: Are not all duplicated reads removed when applying removal duplicated algorithms
2.2 years ago by d-cameron ★ 2.9k
1
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0
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609
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Answer: Answer: New VCF Header (schema) Parser---Please Break!!!
2.2 years ago by d-cameron ★ 2.9k
2
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0
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1.1k
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Answer: Answer: QUAL in VCF file
2.2 years ago by d-cameron ★ 2.9k
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0
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859
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Answer: Answer: Identifying breakpoints of split reads in SAM files
2.2 years ago by d-cameron ★ 2.9k
2
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0
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4.6k
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Comment: Comment: Structural Variants (SV) Manta output interpretation: MantaBND and translocation
2.2 years ago by d-cameron ★ 2.9k
5
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2
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4.6k
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Answer: Answer: Structural Variants (SV) Manta output interpretation: MantaBND and translocation
2.2 years ago by d-cameron ★ 2.9k
4
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1
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1.1k
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What aren't hg19-hg38 liftOver chains symmetrical?
hg38 hg19 liftover
updated 2.5 years ago by ▴ 30 • written 2.5 years ago by ★ 2.9k
1
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1
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923
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Answer: Answer: BAM - number of mapping positions per read
2.5 years ago by d-cameron ★ 2.9k
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